RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SPINK8P0C7L1 97 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 GAGE13Q4V321 117 aa9.73□□□□□ -0.85
CCDC3-202ENST00000378839 C12orf74Q32Q52 190 aa9.72□□□□□ -0.85
CCDC3-202ENST00000378839 C20orf203Q8NBC4 194 aa9.72□□□□□ -0.85
CCDC3-202ENST00000378839 TRAV2A0A0B4J234 112 aa9.72□□□□□ -0.85
CCDC3-202ENST00000378839 ZNF815PA8K554 130 aa9.72□□□□□ -0.85
CCDC3-202ENST00000378839 DYNLRB2Q8TF09 96 aa9.72□□□□□ -0.85
CCDC3-202ENST00000378839 SETXQ7Z333 2677 aaKnown RBP9.72□□□□□ -0.85
CCDC3-202ENST00000378839 IGLL5B9A064 214 aa9.71□□□□□ -0.85
CCDC3-202ENST00000378839 I3L3M4 83 aa9.71□□□□□ -0.85
CCDC3-202ENST00000378839 CEMP1Q6PRD7 247 aaPredicted RBP9.71□□□□□ -0.85
CCDC3-202ENST00000378839 AMELXQ99217 191 aa9.71□□□□□ -0.85
CCDC3-202ENST00000378839 GCN1Q92616 2671 aaKnown RBP9.71□□□□□ -0.85
CCDC3-202ENST00000378839 FHL3Q13643 280 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 TMEM86BQ8N661 226 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 SETD2Q9BYW2 2564 aaPredicted RBP9.71□□□□□ -0.86
CCDC3-202ENST00000378839 PSMB2P49721 201 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 TAL2Q16559 108 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 CFAP126Q5VTH2 177 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 WNK1Q9H4A3 2382 aa9.71□□□□□ -0.86
CCDC3-202ENST00000378839 RHOHQ15669 191 aa9.7□□□□□ -0.86
CCDC3-202ENST00000378839 RNF183Q96D59 192 aa9.7□□□□□ -0.86
CCDC3-202ENST00000378839 MRPL16Q9NX20 251 aaKnown RBP9.7□□□□□ -0.86
CCDC3-202ENST00000378839 SVIPQ8NHG7 77 aa9.7□□□□□ -0.86
CCDC3-202ENST00000378839 CITED2Q99967 270 aaPredicted RBP9.7□□□□□ -0.86
CCDC3-202ENST00000378839 IGLV4-3A0A075B6K6 122 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 M0R2P5 195 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 LINC01587Q99440 93 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 XCL2Q9UBD3 114 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 TMEM170BQ5T4T1 132 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 EDA2RQ9HAV5 297 aa9.69□□□□□ -0.86
CCDC3-202ENST00000378839 H7C2G1 150 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 CCL24O00175 119 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 C1orf158Q8N1D5 194 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 C3orf56Q8N813 242 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 B5MCH6 92 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 RNASE13Q5GAN3 156 aaKnown RBP9.68□□□□□ -0.86
CCDC3-202ENST00000378839 PGPEP1Q9NXJ5 209 aa9.68□□□□□ -0.86
CCDC3-202ENST00000378839 A0A0J9YXV3 536 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 A0A0J9YY99 117 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 NFE4Q86UQ8 179 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 MTORP42345 2549 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 TRBV20-1A0A075B6N2 111 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 IGHV3-64A0A075B6Q5 118 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 LINC01006Q8NI28 216 aa9.67□□□□□ -0.86
CCDC3-202ENST00000378839 IGHV3-38A0A0C4DH36 116 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 ZNF415Q09FC8 603 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 CHCHD7Q9BUK0 85 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 TMEM223A0PJW6 202 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 LINC01549A6NIU2 74 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 ZNF22P17026 224 aaPredicted RBP9.66□□□□□ -0.86
CCDC3-202ENST00000378839 SCGB1D4Q6XE38 83 aa9.66□□□□□ -0.86
CCDC3-202ENST00000378839 XGP55808 180 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 LINC00467Q9BRT7 94 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 WFDC10AQ9H1F0 79 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 IGHV3OR16-12A0A075B7B8 117 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 A8MWV9 139 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 BEAN1Q3B7T3 259 aa9.65□□□□□ -0.86
CCDC3-202ENST00000378839 INSP01308 110 aa9.65□□□□□ -0.87
CCDC3-202ENST00000378839 PAPPA-AS1Q5QFB9 102 aa9.65□□□□□ -0.87
CCDC3-202ENST00000378839 GIG44P09565 113 aaPredicted RBP9.64□□□□□ -0.87
CCDC3-202ENST00000378839 YAE1D1Q9NRH1 226 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 C2CD3Q4AC94 2353 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.64□□□□□ -0.87
CCDC3-202ENST00000378839 IGKV2-29A2NJV5 120 aaPredicted RBP9.64□□□□□ -0.87
CCDC3-202ENST00000378839 F8W1H4 67 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 J3QQQ9 107 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 RHODO00212 210 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 SRSF9Q13242 221 aaKnown RBP eCLIP9.64□□□□□ -0.87
CCDC3-202ENST00000378839 RRN3P1Q2M238 152 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 ANAPC13Q9BS18 74 aa9.64□□□□□ -0.87
CCDC3-202ENST00000378839 JMJD1CQ15652 2540 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 UBE2D1P51668 147 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 IL17DQ8TAD2 202 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 SMR3AQ99954 134 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 TNFRSF18Q9Y5U5 241 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 RS1O15537 224 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 EIF4EBP3O60516 100 aaPredicted RBP9.63□□□□□ -0.87
CCDC3-202ENST00000378839 UNC79Q9P2D8 2635 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 ADARB2-AS1A8MUL3 147 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 IGHV3-53P01767 116 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 IGHV3-30P01768 117 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 IGHV3-30-5P0DP03 117 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 PIK3CD-AS1Q5SR53 167 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 VCX2Q9H322 139 aa9.63□□□□□ -0.87
CCDC3-202ENST00000378839 HERVK_113P61574 105 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 UBE2D4Q9Y2X8 147 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 PYGO1Q9Y3Y4 419 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 SCGB1C2P0DMR2 95 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 STHQ8IWL8 128 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 SLC25A29Q8N8R3 303 aa9.62□□□□□ -0.87
CCDC3-202ENST00000378839 FOXI1Q12951 378 aa9.61□□□□□ -0.87
CCDC3-202ENST00000378839 SPATA25Q9BR10 227 aa9.61□□□□□ -0.87
CCDC3-202ENST00000378839 TRAV25A0A0B4J276 109 aa9.61□□□□□ -0.87
CCDC3-202ENST00000378839 A8MZ25 164 aa9.61□□□□□ -0.87
CCDC3-202ENST00000378839 RNASE1P07998 156 aaKnown RBP9.61□□□□□ -0.87
CCDC3-202ENST00000378839 C10orf126Q8N4M7 172 aa9.61□□□□□ -0.87
CCDC3-202ENST00000378839 TRAV8-3A0A0A6YYJ7 113 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 LEPROTO15243 131 aa9.6□□□□□ -0.87
CCDC3-202ENST00000378839 SPXQ9BT56 116 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms