RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 MIAQ16674 131 aa11.68□□□□□ -0.54
CKAP4-201ENST00000378026 CRYBG3Q68DQ2 2970 aa11.67□□□□□ -0.54
CKAP4-201ENST00000378026 TMEM95Q3KNT9 176 aa11.67□□□□□ -0.54
CKAP4-201ENST00000378026 C19orf54Q5BKX5 351 aa11.67□□□□□ -0.54
CKAP4-201ENST00000378026 TMEM61Q8N0U2 210 aa11.67□□□□□ -0.54
CKAP4-201ENST00000378026 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.66□□□□□ -0.54
CKAP4-201ENST00000378026 IGKV2-29A2NJV5 120 aaPredicted RBP11.66□□□□□ -0.54
CKAP4-201ENST00000378026 DCANP1Q8TF63 244 aa11.66□□□□□ -0.54
CKAP4-201ENST00000378026 IGHV1OR15-1A0A075B7D0 117 aa11.66□□□□□ -0.54
CKAP4-201ENST00000378026 FAM104AQ969W3 186 aa11.66□□□□□ -0.54
CKAP4-201ENST00000378026 IGHV3-38A0A0C4DH36 116 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 BRI3O95415 125 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 MRPS36P82909 103 aaKnown RBP11.65□□□□□ -0.54
CKAP4-201ENST00000378026 VSIG2Q96IQ7 327 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 PPDPFQ9H3Y8 114 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 CSPG4Q6UVK1 2322 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 LMO4P61968 165 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 TMEM101Q96IK0 257 aa11.65□□□□□ -0.54
CKAP4-201ENST00000378026 ADORA2A-AS1P86434 159 aa11.64□□□□□ -0.55
CKAP4-201ENST00000378026 SPANXDQ9BXN6 97 aa11.64□□□□□ -0.55
CKAP4-201ENST00000378026 SPANXCQ9NY87 97 aa11.64□□□□□ -0.55
CKAP4-201ENST00000378026 LINC01587Q99440 93 aa11.64□□□□□ -0.55
CKAP4-201ENST00000378026 MUC6Q6W4X9 2439 aa11.64□□□□□ -0.55
CKAP4-201ENST00000378026 LINC01600Q96MT4 127 aa11.63□□□□□ -0.55
CKAP4-201ENST00000378026 H3BUX3 64 aa11.63□□□□□ -0.55
CKAP4-201ENST00000378026 USMG5Q96IX5 58 aa11.63□□□□□ -0.55
CKAP4-201ENST00000378026 TNFRSF18Q9Y5U5 241 aa11.63□□□□□ -0.55
CKAP4-201ENST00000378026 FBXL19-AS1Q494R0 122 aa11.63□□□□□ -0.55
CKAP4-201ENST00000378026 MRPL23Q16540 153 aaKnown RBP11.62□□□□□ -0.55
CKAP4-201ENST00000378026 SMCR5Q8TEV8 140 aa11.62□□□□□ -0.55
CKAP4-201ENST00000378026 CDKN2A-AS1Q9UH64 79 aa11.61□□□□□ -0.55
CKAP4-201ENST00000378026 FAM240AA0A1B0GVK7 77 aa11.61□□□□□ -0.55
CKAP4-201ENST00000378026 CITED2Q99967 270 aaPredicted RBP11.61□□□□□ -0.55
CKAP4-201ENST00000378026 TRBV7-7A0A0K0K1E9 115 aa11.61□□□□□ -0.55
CKAP4-201ENST00000378026 C9orf153Q5TBE3 101 aa11.61□□□□□ -0.55
CKAP4-201ENST00000378026 CSMD2Q7Z408 3487 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 IGHG2P01859 326 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 IGHV4-38-2P0DP08 117 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 YAE1D1Q9NRH1 226 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 ABCA2Q9BZC7 2435 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 VPREB3Q9UKI3 123 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 C2CD3Q4AC94 2353 aa11.6□□□□□ -0.55
CKAP4-201ENST00000378026 LINC00694P0DN24 101 aa11.59□□□□□ -0.55
CKAP4-201ENST00000378026 SNRPD3P62318 126 aaKnown RBP11.59□□□□□ -0.55
CKAP4-201ENST00000378026 C10orf99Q6UWK7 81 aa11.59□□□□□ -0.55
CKAP4-201ENST00000378026 KLK5Q9Y337 293 aaPredicted RBP11.59□□□□□ -0.55
CKAP4-201ENST00000378026 NCOR2Q9Y618 2525 aa11.59□□□□□ -0.55
CKAP4-201ENST00000378026 NOTCH3Q9UM47 2321 aa11.59□□□□□ -0.55
CKAP4-201ENST00000378026 Q6ZSN1 163 aa11.58□□□□□ -0.55
CKAP4-201ENST00000378026 Q8N2B8 174 aa11.58□□□□□ -0.55
CKAP4-201ENST00000378026 PYGO1Q9Y3Y4 419 aa11.58□□□□□ -0.55
CKAP4-201ENST00000378026 DEFB121Q5J5C9 76 aa11.58□□□□□ -0.56
CKAP4-201ENST00000378026 LINC00467Q9BRT7 94 aa11.58□□□□□ -0.56
CKAP4-201ENST00000378026 TINCRA0A1B0GVN0 87 aa11.58□□□□□ -0.56
CKAP4-201ENST00000378026 RS1O15537 224 aa11.58□□□□□ -0.56
CKAP4-201ENST00000378026 DAZ2Q13117 558 aaKnown RBP11.58□□□□□ -0.56
CKAP4-201ENST00000378026 DAZ4Q86SG3 579 aaKnown RBP11.58□□□□□ -0.56
CKAP4-201ENST00000378026 DAZ3Q9NR90 486 aaKnown RBP11.58□□□□□ -0.56
CKAP4-201ENST00000378026 LOC107984640A0A0U1RRK4 108 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.57□□□□□ -0.56
CKAP4-201ENST00000378026 Q9H8V8 135 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 HIVEP3Q5T1R4 2406 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 CHD8Q9HCK8 2581 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 TMEM126AQ9H061 195 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 UBE2D4Q9Y2X8 147 aa11.57□□□□□ -0.56
CKAP4-201ENST00000378026 RBMY1A1P0DJD3 496 aaKnown RBP11.56□□□□□ -0.56
CKAP4-201ENST00000378026 RBMY1CP0DJD4 496 aa11.56□□□□□ -0.56
CKAP4-201ENST00000378026 RBMY1FQ15415 496 aaKnown RBP11.56□□□□□ -0.56
CKAP4-201ENST00000378026 DGAT2L7PQ6IED9 249 aa11.56□□□□□ -0.56
CKAP4-201ENST00000378026 LINC00308Q8TCZ7 52 aa11.56□□□□□ -0.56
CKAP4-201ENST00000378026 CHCHD7Q9BUK0 85 aa11.56□□□□□ -0.56
CKAP4-201ENST00000378026 SPANXA1Q9NS26 97 aa11.56□□□□□ -0.56
CKAP4-201ENST00000378026 SYNJ2BPP57105 145 aa11.55□□□□□ -0.56
CKAP4-201ENST00000378026 COX6A2Q02221 97 aa11.55□□□□□ -0.56
CKAP4-201ENST00000378026 CIRBPQ14011 172 aaKnown RBP11.55□□□□□ -0.56
CKAP4-201ENST00000378026 CELSR2Q9HCU4 2923 aa11.55□□□□□ -0.56
CKAP4-201ENST00000378026 BAALC-AS2P0C853 105 aa11.54□□□□□ -0.56
CKAP4-201ENST00000378026 HOXD3P31249 432 aaPredicted RBP11.54□□□□□ -0.56
CKAP4-201ENST00000378026 GAGE2AQ6NT46 116 aa11.54□□□□□ -0.56
CKAP4-201ENST00000378026 COX7A2LO14548 114 aa11.54□□□□□ -0.56
CKAP4-201ENST00000378026 NDUFA7O95182 113 aa11.54□□□□□ -0.56
CKAP4-201ENST00000378026 Q9HAA7 133 aa11.54□□□□□ -0.56
CKAP4-201ENST00000378026 C3orf22Q8N5N4 141 aa11.53□□□□□ -0.56
CKAP4-201ENST00000378026 SOSTDC1Q6X4U4 206 aa11.53□□□□□ -0.56
CKAP4-201ENST00000378026 K7ENP7 123 aa11.52□□□□□ -0.56
CKAP4-201ENST00000378026 HERVK_113P63121 156 aa11.52□□□□□ -0.57
CKAP4-201ENST00000378026 LINC00643Q86TS7 51 aa11.52□□□□□ -0.57
CKAP4-201ENST00000378026 H3BUA1 57 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 K7EMT4 169 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 K7EQG2 157 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 IGLV1-40P01703 118 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 ACYP1P07311 99 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 NDUFA1O15239 70 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 FAM218AQ96MZ4 157 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 TIRAPP58753 221 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 EDA2RQ9HAV5 297 aa11.51□□□□□ -0.57
CKAP4-201ENST00000378026 TRAV13-1A0A0B4J241 112 aa11.5□□□□□ -0.57
CKAP4-201ENST00000378026 PIK3CD-AS1Q5SR53 167 aa11.5□□□□□ -0.57
CKAP4-201ENST00000378026 A6NDX4 124 aa11.5□□□□□ -0.57
CKAP4-201ENST00000378026 PRIMA1Q86XR5 153 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms