RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TIMM17AQ99595 171 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 ZNF580Q9UK33 172 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 SIVA1O15304 175 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 PFN2P35080 140 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 C20orf203Q8NBC4 194 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 HHLA3Q9XRX5 114 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 K7EP13 123 aa10.78□□□□□ -0.68
TCOF1-202ENST00000377797 C9JAW5 83 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 LEPROTO15243 131 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 FGF6P10767 208 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 TRAV12-1A0A0B4J245 112 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 ETDBQ3ZM63 59 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 S100A7L2Q5SY68 101 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 SPATA12Q7Z6I5 190 aa10.77□□□□□ -0.69
TCOF1-202ENST00000377797 F8P00451 2351 aa10.76□□□□□ -0.69
TCOF1-202ENST00000377797 XCL1P47992 114 aa10.76□□□□□ -0.69
TCOF1-202ENST00000377797 OPRPNQ99935 248 aaPredicted RBP10.76□□□□□ -0.69
TCOF1-202ENST00000377797 WFDC10AQ9H1F0 79 aa10.76□□□□□ -0.69
TCOF1-202ENST00000377797 SCRT2Q9NQ03 307 aa10.76□□□□□ -0.69
TCOF1-202ENST00000377797 TRBV10-1A0A0K0K1A3 114 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 MRPL23Q16540 153 aaKnown RBP10.75□□□□□ -0.69
TCOF1-202ENST00000377797 CEND1Q8N111 149 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 K7EP34 96 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 EYSQ5T1H1 3165 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 TRAV4A0A0B4J268 109 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 PRM2P04554 102 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 TAL2Q16559 108 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 LINC00482Q8N8I6 264 aa10.75□□□□□ -0.69
TCOF1-202ENST00000377797 COL27A1Q8IZC6 1860 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-202ENST00000377797 C11orf86A6NJI1 115 aa10.74□□□□□ -0.69
TCOF1-202ENST00000377797 C5orf38Q86SI9 138 aa10.74□□□□□ -0.69
TCOF1-202ENST00000377797 SLC25A20O43772 301 aa10.74□□□□□ -0.69
TCOF1-202ENST00000377797 U3KQK5 164 aa10.74□□□□□ -0.69
TCOF1-202ENST00000377797 TNRC18O15417 2968 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-202ENST00000377797 ZMAT4Q9H898 229 aa10.74□□□□□ -0.69
TCOF1-202ENST00000377797 CEMP1Q6PRD7 247 aaPredicted RBP10.74□□□□□ -0.69
TCOF1-202ENST00000377797 TRAV8-3A0A0A6YYJ7 113 aa10.73□□□□□ -0.69
TCOF1-202ENST00000377797 GAS8-AS1O95177 125 aa10.73□□□□□ -0.69
TCOF1-202ENST00000377797 K7ERJ3 54 aa10.73□□□□□ -0.69
TCOF1-202ENST00000377797 CNFNQ9BYD5 112 aa10.73□□□□□ -0.69
TCOF1-202ENST00000377797 ZNF561-AS1K7EIQ3 104 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 M0QY20 66 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 PRO0255Q9UI72 69 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 REV3LO60673 3130 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 NXPH4O95158 308 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 AMTNQ6UX39 209 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.72□□□□□ -0.69
TCOF1-202ENST00000377797 Q9H8V8 135 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 GHRHP01286 108 aa10.72□□□□□ -0.69
TCOF1-202ENST00000377797 CELSR3Q9NYQ7 3312 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 A0A1W2PPM0 123 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 PROK1P58294 105 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 ODF3L2Q3SX64 289 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 CFAP46Q8IYW2 2715 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 TEX48A0A1B0GUV7 120 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 PSCAO43653 123 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 ICOSQ9Y6W8 199 aa10.71□□□□□ -0.69
TCOF1-202ENST00000377797 F8W1H4 67 aa10.71□□□□□ -0.7
TCOF1-202ENST00000377797 NDUFA7O95182 113 aa10.71□□□□□ -0.7
TCOF1-202ENST00000377797 UBE2WQ96B02 151 aa10.71□□□□□ -0.7
TCOF1-202ENST00000377797 IGHV4-4A0A075B6R2 117 aa10.71□□□□□ -0.7
TCOF1-202ENST00000377797 HIST1H4AP62805 103 aaKnown RBP10.71□□□□□ -0.7
TCOF1-202ENST00000377797 FAM222AQ5U5X8 452 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 CFAP126Q5VTH2 177 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 BOD1L2Q8IYS8 172 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 NRACQ8N912 160 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 E9PLD3 99 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 SOCS3O14543 225 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 LINC00310P59036 64 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 PRO1854Q9UHT4 67 aa10.7□□□□□ -0.7
TCOF1-202ENST00000377797 IGLV10-54A0A075B6I4 117 aa10.69□□□□□ -0.7
TCOF1-202ENST00000377797 TRBV20-1A0A075B6N2 111 aa10.69□□□□□ -0.7
TCOF1-202ENST00000377797 COX8CQ7Z4L0 72 aa10.69□□□□□ -0.7
TCOF1-202ENST00000377797 C12orf74Q32Q52 190 aa10.69□□□□□ -0.7
TCOF1-202ENST00000377797 PPDPFLQ8WWR9 84 aa10.69□□□□□ -0.7
TCOF1-202ENST00000377797 C9orf85Q96MD7 179 aa10.68□□□□□ -0.7
TCOF1-202ENST00000377797 SLC25A29Q8N8R3 303 aa10.68□□□□□ -0.7
TCOF1-202ENST00000377797 VSIG2Q96IQ7 327 aa10.68□□□□□ -0.7
TCOF1-202ENST00000377797 CRYGDP07320 174 aa10.68□□□□□ -0.7
TCOF1-202ENST00000377797 EDA2RQ9HAV5 297 aa10.68□□□□□ -0.7
TCOF1-202ENST00000377797 HELZ2Q9BYK8 2649 aaKnown RBP10.67□□□□□ -0.7
TCOF1-202ENST00000377797 GAGE12HA6NDE8 117 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 Q6ZUT4 128 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 H3BMG7 143 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 NEXN-AS1Q8NBZ9 246 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 AGRNO00468 2067 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 SMIM9A6NGZ8 99 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 SH2D6Q7Z4S9 175 aa10.67□□□□□ -0.7
TCOF1-202ENST00000377797 TRBV27A0A0K0K1C4 114 aa10.66□□□□□ -0.7
TCOF1-202ENST00000377797 SHISA2Q6UWI4 295 aa10.66□□□□□ -0.7
TCOF1-202ENST00000377797 FLNAP21333 2647 aaKnown RBP10.66□□□□□ -0.7
TCOF1-202ENST00000377797 GAGE2AQ6NT46 116 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 RBX1P62877 108 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 TRBV6-5A0A0K0K1A5 114 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 FXYD2P54710 66 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 SS18L2Q9UHA2 77 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 LINC00467Q9BRT7 94 aa10.65□□□□□ -0.7
TCOF1-202ENST00000377797 HIGD1BQ9P298 99 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 IGLV1-51P01701 117 aa10.64□□□□□ -0.71
TCOF1-202ENST00000377797 IGHV3-30P01768 117 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms