RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 TRAV2A0A0B4J234 112 aa18.48■□□□□ 0.55
C9orf40-201ENST00000376854 A8MWV9 139 aa18.48■□□□□ 0.55
C9orf40-201ENST00000376854 SMAGPQ0VAQ4 97 aa18.48■□□□□ 0.55
C9orf40-201ENST00000376854 FAM104AQ969W3 186 aa18.48■□□□□ 0.55
C9orf40-201ENST00000376854 TLN2Q9Y4G6 2542 aa18.47■□□□□ 0.55
C9orf40-201ENST00000376854 APCP25054 2843 aa18.47■□□□□ 0.55
C9orf40-201ENST00000376854 CEMP1Q6PRD7 247 aaPredicted RBP18.46■□□□□ 0.55
C9orf40-201ENST00000376854 TMEM61Q8N0U2 210 aa18.46■□□□□ 0.55
C9orf40-201ENST00000376854 SPXQ9BT56 116 aa18.46■□□□□ 0.55
C9orf40-201ENST00000376854 NBPF19A0A087WUL8 3843 aa18.45■□□□□ 0.54
C9orf40-201ENST00000376854 SCGB1C2P0DMR2 95 aa18.45■□□□□ 0.54
C9orf40-201ENST00000376854 ZNF415Q09FC8 603 aa18.45■□□□□ 0.54
C9orf40-201ENST00000376854 DEFB113Q30KQ7 82 aa18.45■□□□□ 0.54
C9orf40-201ENST00000376854 MUSTN1Q8IVN3 82 aa18.45■□□□□ 0.54
C9orf40-201ENST00000376854 MRPS36P82909 103 aaKnown RBP18.44■□□□□ 0.54
C9orf40-201ENST00000376854 PEMTQ9UBM1 199 aa18.44■□□□□ 0.54
C9orf40-201ENST00000376854 Q9UF83 564 aa18.44■□□□□ 0.54
C9orf40-201ENST00000376854 IGHV3-30-3P0DP02 117 aa18.44■□□□□ 0.54
C9orf40-201ENST00000376854 HIST2H2BDQ6DRA6 164 aa18.44■□□□□ 0.54
C9orf40-201ENST00000376854 Q6ZSN1 163 aa18.44■□□□□ 0.54
C9orf40-201ENST00000376854 EIF4EBP3O60516 100 aaPredicted RBP18.43■□□□□ 0.54
C9orf40-201ENST00000376854 SCGB1A1P11684 91 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 CRYBA4P53673 196 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 PTH2Q96A98 100 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 RAX2Q96IS3 184 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 TIMM21Q9BVV7 248 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 RNASE13Q5GAN3 156 aaKnown RBP18.43■□□□□ 0.54
C9orf40-201ENST00000376854 PIK3CD-AS1Q5SR53 167 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 TMEM263Q8WUH6 116 aaKnown RBP18.43■□□□□ 0.54
C9orf40-201ENST00000376854 Q96MF0 132 aa18.43■□□□□ 0.54
C9orf40-201ENST00000376854 A0A0J9YXY3 114 aa18.42■□□□□ 0.54
C9orf40-201ENST00000376854 AKAP9Q99996 3911 aa18.42■□□□□ 0.54
C9orf40-201ENST00000376854 Q8N2B8 174 aa18.41■□□□□ 0.54
C9orf40-201ENST00000376854 MAP6D1Q9H9H5 199 aa18.41■□□□□ 0.54
C9orf40-201ENST00000376854 PRRC2AP48634 2157 aaKnown RBP18.41■□□□□ 0.54
C9orf40-201ENST00000376854 IGHV3-33P01772 117 aa18.41■□□□□ 0.54
C9orf40-201ENST00000376854 KHDC1LQ5JSQ8 128 aa18.41■□□□□ 0.54
C9orf40-201ENST00000376854 A0A0B4J2C4 111 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 ADARB2-AS1A8MUL3 147 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 C4orf3Q8WVX3 66 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 LINC01587Q99440 93 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 CHCHD7Q9BUK0 85 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 DYNLRB2Q8TF09 96 aa18.4■□□□□ 0.54
C9orf40-201ENST00000376854 TRAV8-3A0A0A6YYJ7 113 aa18.39■□□□□ 0.53
C9orf40-201ENST00000376854 ERG28Q9UKR5 140 aa18.39■□□□□ 0.53
C9orf40-201ENST00000376854 TEN1Q86WV5 123 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 SBSPONQ8IVN8 264 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 UBE2D4Q9Y2X8 147 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 TRAV16A0A0A6YYK6 109 aaPredicted RBP18.38■□□□□ 0.53
C9orf40-201ENST00000376854 H7C2G1 150 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 C11orf72Q8NBR9 251 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 SPANXA1Q9NS26 97 aa18.38■□□□□ 0.53
C9orf40-201ENST00000376854 ITPR3Q14573 2671 aa18.37■□□□□ 0.53
C9orf40-201ENST00000376854 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.37■□□□□ 0.53
C9orf40-201ENST00000376854 IGHV1-58A0A0C4DH39 117 aa18.37■□□□□ 0.53
C9orf40-201ENST00000376854 IGKV2-29A2NJV5 120 aaPredicted RBP18.37■□□□□ 0.53
C9orf40-201ENST00000376854 KRTAP1-3Q8IUG1 177 aa18.37■□□□□ 0.53
C9orf40-201ENST00000376854 PPDPFLQ8WWR9 84 aa18.37■□□□□ 0.53
C9orf40-201ENST00000376854 SONP18583 2426 aaKnown RBP18.36■□□□□ 0.53
C9orf40-201ENST00000376854 CARD19Q96LW7 228 aa18.35■□□□□ 0.53
C9orf40-201ENST00000376854 TINCRA0A1B0GVN0 87 aa18.35■□□□□ 0.53
C9orf40-201ENST00000376854 LITAFQ99732 161 aa18.35■□□□□ 0.53
C9orf40-201ENST00000376854 INSP01308 110 aa18.34■□□□□ 0.53
C9orf40-201ENST00000376854 IGHV3-53P01767 116 aa18.34■□□□□ 0.53
C9orf40-201ENST00000376854 DEFB114Q30KQ6 69 aa18.34■□□□□ 0.53
C9orf40-201ENST00000376854 LINC00467Q9BRT7 94 aa18.34■□□□□ 0.53
C9orf40-201ENST00000376854 IGHV3-38A0A0C4DH36 116 aa18.34■□□□□ 0.53
C9orf40-201ENST00000376854 NDUFA12Q9UI09 145 aa18.33■□□□□ 0.53
C9orf40-201ENST00000376854 NACAE9PAV3 2078 aa18.33■□□□□ 0.52
C9orf40-201ENST00000376854 Q6ZUT4 128 aa18.33■□□□□ 0.52
C9orf40-201ENST00000376854 VSIG2Q96IQ7 327 aa18.33■□□□□ 0.52
C9orf40-201ENST00000376854 DNAJC30Q96LL9 226 aa18.33■□□□□ 0.52
C9orf40-201ENST00000376854 Q1RN00 199 aa18.32■□□□□ 0.52
C9orf40-201ENST00000376854 BEAN1Q3B7T3 259 aa18.32■□□□□ 0.52
C9orf40-201ENST00000376854 LRRC75A-AS1Q8N1F1 130 aa18.32■□□□□ 0.52
C9orf40-201ENST00000376854 CDIP1Q9H305 208 aa18.32■□□□□ 0.52
C9orf40-201ENST00000376854 NF1P21359 2839 aa18.32■□□□□ 0.52
C9orf40-201ENST00000376854 PRSS2P07478 247 aa18.31■□□□□ 0.52
C9orf40-201ENST00000376854 SPINK8P0C7L1 97 aa18.31■□□□□ 0.52
C9orf40-201ENST00000376854 ANKRD29Q8N6D5 301 aa18.31■□□□□ 0.52
C9orf40-201ENST00000376854 RS1O15537 224 aa18.3■□□□□ 0.52
C9orf40-201ENST00000376854 TENM4Q6N022 2769 aa18.3■□□□□ 0.52
C9orf40-201ENST00000376854 CHD6Q8TD26 2715 aa18.3■□□□□ 0.52
C9orf40-201ENST00000376854 A8MZ25 164 aa18.29■□□□□ 0.52
C9orf40-201ENST00000376854 C9JAW5 83 aa18.29■□□□□ 0.52
C9orf40-201ENST00000376854 FHL3Q13643 280 aa18.29■□□□□ 0.52
C9orf40-201ENST00000376854 ADAMTSL4-AS1Q5T5F5 129 aa18.29■□□□□ 0.52
C9orf40-201ENST00000376854 SLC25A20O43772 301 aa18.29■□□□□ 0.52
C9orf40-201ENST00000376854 GEMIN7Q9H840 131 aaKnown RBP18.28■□□□□ 0.52
C9orf40-201ENST00000376854 CCDC168Q8NDH2 2452 aa18.28■□□□□ 0.52
C9orf40-201ENST00000376854 SPANXDQ9BXN6 97 aa18.28■□□□□ 0.52
C9orf40-201ENST00000376854 SPANXCQ9NY87 97 aa18.28■□□□□ 0.52
C9orf40-201ENST00000376854 XCL2Q9UBD3 114 aa18.28■□□□□ 0.52
C9orf40-201ENST00000376854 CUBNO60494 3623 aa18.27■□□□□ 0.52
C9orf40-201ENST00000376854 FLNAP21333 2647 aaKnown RBP18.26■□□□□ 0.51
C9orf40-201ENST00000376854 MIAQ16674 131 aa18.25■□□□□ 0.51
C9orf40-201ENST00000376854 HIST2H2BCQ6DN03 193 aa18.25■□□□□ 0.51
C9orf40-201ENST00000376854 WFDC11Q8NEX6 87 aa18.24■□□□□ 0.51
C9orf40-201ENST00000376854 ATXN8Q156A1 80 aa18.24■□□□□ 0.51
C9orf40-201ENST00000376854 ODF3L2Q3SX64 289 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms