RNA–Protein interactions for RNA: ENST00000373010.5

USP49-202, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 5 BASIC

Gene USP49, Length 2,446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-202ENST00000373010 BEAN1Q3B7T3 259 aa13.56□□□□□ -0.24
USP49-202ENST00000373010 CEMP1Q6PRD7 247 aaPredicted RBP13.56□□□□□ -0.24
USP49-202ENST00000373010 NFE4Q86UQ8 179 aa13.56□□□□□ -0.24
USP49-202ENST00000373010 SETXQ7Z333 2677 aaKnown RBP13.56□□□□□ -0.24
USP49-202ENST00000373010 SAP30O75446 220 aa13.55□□□□□ -0.24
USP49-202ENST00000373010 FAM104AQ969W3 186 aa13.55□□□□□ -0.24
USP49-202ENST00000373010 VCX2Q9H322 139 aa13.55□□□□□ -0.24
USP49-202ENST00000373010 A0A0J9YXV3 536 aa13.55□□□□□ -0.24
USP49-202ENST00000373010 IGLL5B9A064 214 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 RHODO00212 210 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 RS1O15537 224 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 SMR3AQ99954 134 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 IGHV3-38A0A0C4DH36 116 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 IGHV3-53P01767 116 aa13.54□□□□□ -0.24
USP49-202ENST00000373010 JMJD1CQ15652 2540 aa13.53□□□□□ -0.24
USP49-202ENST00000373010 ZNF22P17026 224 aaPredicted RBP13.53□□□□□ -0.24
USP49-202ENST00000373010 SRSF9Q13242 221 aaKnown RBP eCLIP13.53□□□□□ -0.24
USP49-202ENST00000373010 RNASE13Q5GAN3 156 aaKnown RBP13.53□□□□□ -0.24
USP49-202ENST00000373010 CHCHD7Q9BUK0 85 aa13.53□□□□□ -0.24
USP49-202ENST00000373010 WFDC10AQ9H1F0 79 aa13.53□□□□□ -0.24
USP49-202ENST00000373010 A0A0J9YY99 117 aa13.52□□□□□ -0.24
USP49-202ENST00000373010 TMEM223A0PJW6 202 aa13.52□□□□□ -0.24
USP49-202ENST00000373010 J3QQQ9 107 aa13.52□□□□□ -0.24
USP49-202ENST00000373010 FASNP49327 2511 aaKnown RBP13.52□□□□□ -0.24
USP49-202ENST00000373010 IGHV3-64A0A075B6Q5 118 aa13.52□□□□□ -0.25
USP49-202ENST00000373010 ZNF418Q8TF45 676 aaPredicted RBP13.52□□□□□ -0.25
USP49-202ENST00000373010 AMELXQ99217 191 aa13.52□□□□□ -0.25
USP49-202ENST00000373010 PYGO1Q9Y3Y4 419 aa13.52□□□□□ -0.25
USP49-202ENST00000373010 TRGV1A0A0A0MS02 117 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 RBX1P62877 108 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 NOTCH3Q9UM47 2321 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.51□□□□□ -0.25
USP49-202ENST00000373010 A0A1B0GWB2 263 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 IGKV2-29A2NJV5 120 aaPredicted RBP13.51□□□□□ -0.25
USP49-202ENST00000373010 ADARB2-AS1A8MUL3 147 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 HILS1P60008 231 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 OCIAD2Q56VL3 154 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 OR5A1Q8NGJ0 315 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 IL17DQ8TAD2 202 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 ZNF479Q96JC4 524 aa13.51□□□□□ -0.25
USP49-202ENST00000373010 LGALS3P17931 250 aaKnown RBP13.5□□□□□ -0.25
USP49-202ENST00000373010 LEPROTO15243 131 aa13.49□□□□□ -0.25
USP49-202ENST00000373010 GIG44P09565 113 aaPredicted RBP13.49□□□□□ -0.25
USP49-202ENST00000373010 DNAJC30Q96LL9 226 aa13.49□□□□□ -0.25
USP49-202ENST00000373010 Q6ZTI0 123 aa13.48□□□□□ -0.25
USP49-202ENST00000373010 UBE2D4Q9Y2X8 147 aa13.48□□□□□ -0.25
USP49-202ENST00000373010 IGLV1-51P01701 117 aa13.48□□□□□ -0.25
USP49-202ENST00000373010 RNF151Q2KHN1 245 aa13.48□□□□□ -0.25
USP49-202ENST00000373010 RRN3P1Q2M238 152 aa13.48□□□□□ -0.25
USP49-202ENST00000373010 RPL35AP18077 110 aaKnown RBP13.47□□□□□ -0.25
USP49-202ENST00000373010 COTL1Q14019 142 aa13.47□□□□□ -0.25
USP49-202ENST00000373010 SLC25A29Q8N8R3 303 aa13.46□□□□□ -0.25
USP49-202ENST00000373010 TMEM263Q8WUH6 116 aaKnown RBP13.45□□□□□ -0.26
USP49-202ENST00000373010 C19orf73Q9NVV2 129 aa13.45□□□□□ -0.26
USP49-202ENST00000373010 GCN1Q92616 2671 aaKnown RBP13.45□□□□□ -0.26
USP49-202ENST00000373010 MRPS36P82909 103 aaKnown RBP13.45□□□□□ -0.26
USP49-202ENST00000373010 Q6ZUT4 128 aa13.45□□□□□ -0.26
USP49-202ENST00000373010 SPANXA1Q9NS26 97 aa13.45□□□□□ -0.26
USP49-202ENST00000373010 HIVEP2P31629 2446 aa13.45□□□□□ -0.26
USP49-202ENST00000373010 TMEM238LA0A1B0GVL6 79 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 A6NJY4 79 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 UBE2D1P51668 147 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 SPANXB1Q9NS25 103 aaPredicted RBP13.44□□□□□ -0.26
USP49-202ENST00000373010 NDUFA7O95182 113 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 IGHV3-30P01768 117 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 IGHV3-30-5P0DP03 117 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 NOP10Q9NPE3 64 aaKnown RBP13.44□□□□□ -0.26
USP49-202ENST00000373010 PGPEP1Q9NXJ5 209 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 CBY1Q9Y3M2 126 aa13.44□□□□□ -0.26
USP49-202ENST00000373010 CRYBA4P53673 196 aa13.43□□□□□ -0.26
USP49-202ENST00000373010 CMC4P56277 68 aaPredicted RBP13.43□□□□□ -0.26
USP49-202ENST00000373010 APOMO95445 188 aa13.43□□□□□ -0.26
USP49-202ENST00000373010 KRTAP10-3P60369 221 aa13.43□□□□□ -0.26
USP49-202ENST00000373010 HECTD1Q9ULT8 2610 aa13.43□□□□□ -0.26
USP49-202ENST00000373010 TRAV8-3A0A0A6YYJ7 113 aa13.42□□□□□ -0.26
USP49-202ENST00000373010 IGHV3-30-3P0DP02 117 aa13.41□□□□□ -0.26
USP49-202ENST00000373010 TIMM21Q9BVV7 248 aa13.41□□□□□ -0.26
USP49-202ENST00000373010 PLAC8L1A1L4L8 177 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 K7EQD1 137 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 C10orf126Q8N4M7 172 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 TRAV4A0A0B4J268 109 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 H3BMG7 143 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 LY6G6DO95868 133 aa13.4□□□□□ -0.26
USP49-202ENST00000373010 TINCRA0A1B0GVN0 87 aa13.39□□□□□ -0.27
USP49-202ENST00000373010 SFTA2Q6UW10 78 aa13.39□□□□□ -0.27
USP49-202ENST00000373010 FAM110AQ9BQ89 295 aa13.39□□□□□ -0.27
USP49-202ENST00000373010 K7ERU9 68 aa13.39□□□□□ -0.27
USP49-202ENST00000373010 NDUFA11Q86Y39 141 aa13.39□□□□□ -0.27
USP49-202ENST00000373010 TSPAN13O95857 204 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 RPL36AP83881 106 aaKnown RBP13.38□□□□□ -0.27
USP49-202ENST00000373010 CSNK1G2-AS1Q8NCQ2 148 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 RPL36ALQ969Q0 106 aaKnown RBP13.38□□□□□ -0.27
USP49-202ENST00000373010 GAGE12JA6NER3 117 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 A8MZ25 164 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 GAGE7O76087 117 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 SPINK8P0C7L1 97 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 CFC1BP0CG36 223 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 CFC1P0CG37 223 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 GAGE12FP0CL80 117 aa13.38□□□□□ -0.27
USP49-202ENST00000373010 GAGE12GP0CL81 117 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms