RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 FAM110DQ8TAY7 271 aaPredicted RBP4.01□□□□□ -1.77
ATG4A-204ENST00000372246 SPANXCQ9NY87 97 aa4.01□□□□□ -1.77
ATG4A-204ENST00000372246 MXRA5Q9NR99 2828 aa4.01□□□□□ -1.77
ATG4A-204ENST00000372246 SETD2Q9BYW2 2564 aaPredicted RBP4.01□□□□□ -1.77
ATG4A-204ENST00000372246 TRAV21A0A0B4J279 112 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 IGHV3-38A0A0C4DH36 116 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 A0A0J9YXY3 114 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 LOC107984640A0A0U1RRK4 108 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 TMEM262E9PQX1 116 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 J3QLI3 93 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 POLR2KP53803 58 aaKnown RBP4□□□□□ -1.77
ATG4A-204ENST00000372246 ZNF876PQ49A33 203 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 Q6Q795 121 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 C2orf82Q6UX34 121 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 PRRC2AP48634 2157 aaKnown RBP4□□□□□ -1.77
ATG4A-204ENST00000372246 TMEM223A0PJW6 202 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 LINC01619G3V211 115 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 J3KT08 172 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 BLCAPP62952 87 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 SPINK13Q1W4C9 94 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 TMEM190Q8WZ59 177 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 ABCA2Q9BZC7 2435 aa4□□□□□ -1.77
ATG4A-204ENST00000372246 NDUFA7O95182 113 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 IGHV3-30-3P0DP02 117 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 FAM104AQ969W3 186 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 LITAFQ99732 161 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 MUC6Q6W4X9 2439 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.99□□□□□ -1.77
ATG4A-204ENST00000372246 IGKV2-29A2NJV5 120 aaPredicted RBP3.99□□□□□ -1.77
ATG4A-204ENST00000372246 H3BMM0 161 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 SOCS3O14543 225 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 PSMG4Q5JS54 123 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 FAM19A5Q7Z5A7 132 aaPredicted RBP3.99□□□□□ -1.77
ATG4A-204ENST00000372246 SMCR5Q8TEV8 140 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 UBE2WQ96B02 151 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 RHPN1-AS1Q9BWJ2 59 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 NF1P21359 2839 aa3.99□□□□□ -1.77
ATG4A-204ENST00000372246 IGLV4-3A0A075B6K6 122 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 TRGV11A0A075B6L2 103 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 IGHV3-16A0A0C4DH30 117 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 OOSP1A8MZH6 123 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 IGHG2P01859 326 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 Q6ZSN1 163 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 Q8N2B8 174 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 POM121L12Q8N7R1 296 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 LINC01587Q99440 93 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 BPESC1Q9GZL8 116 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 SIRPDQ9H106 197 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 ICOSQ9Y6W8 199 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 USP9YO00507 2555 aaPredicted RBP3.98□□□□□ -1.77
ATG4A-204ENST00000372246 TRAV41A0A0B4J266 112 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 FAM236AA0A1B0GUQ0 79 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 FAM236BA0A1B0GV22 79 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 I3L3M4 83 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 M0QY20 66 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 LGALS9O00182 355 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 VCYO14598 125 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 NXPH4O95158 308 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 ATXN8Q156A1 80 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.98□□□□□ -1.77
ATG4A-204ENST00000372246 C5orf56Q8N8D9 126 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 TMEM101Q96IK0 257 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 CYSTM1Q9H1C7 97 aa3.98□□□□□ -1.77
ATG4A-204ENST00000372246 HIVEP3Q5T1R4 2406 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 WNK1Q9H4A3 2382 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 KRTAP4-8A0A0G2JLE6 195 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 M0R2P5 195 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 LEPROTO15243 131 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 CD28P10747 220 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 HOXD3P31249 432 aaPredicted RBP3.97□□□□□ -1.77
ATG4A-204ENST00000372246 SYNJ2BPP57105 145 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 C9orf139Q6ZV77 190 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 FLNCQ14315 2725 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 TRBV10-2A0A0K0K1G8 114 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 M0R1W7 72 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 RBMY1A1P0DJD3 496 aaKnown RBP3.97□□□□□ -1.77
ATG4A-204ENST00000372246 RBMY1CP0DJD4 496 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 RPL13AP40429 203 aaKnown RBP3.97□□□□□ -1.77
ATG4A-204ENST00000372246 EBI3Q14213 229 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 RBMY1FQ15415 496 aaKnown RBP3.97□□□□□ -1.77
ATG4A-204ENST00000372246 NSUN5P1Q3KNT7 163 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 MINOS1Q5TGZ0 78 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 LYRM7Q5U5X0 104 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 SPTBN4Q9H254 2564 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 JMJD1CQ15652 2540 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 CHD6Q8TD26 2715 aa3.97□□□□□ -1.77
ATG4A-204ENST00000372246 TRBV27A0A0K0K1C4 114 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 ZNF561-AS1K7EIQ3 104 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 LINC00694P0DN24 101 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 IGHV4-38-2P0DP08 117 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 C6orf226Q5I0X4 101 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 C9orf129Q5T035 196 aaKnown RBP3.96□□□□□ -1.77
ATG4A-204ENST00000372246 FAM19A4Q96LR4 140 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 TIMM21Q9BVV7 248 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 Q9HAA7 133 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 NDUFA12Q9UI09 145 aa3.96□□□□□ -1.77
ATG4A-204ENST00000372246 NBEAL2Q6ZNJ1 2754 aa3.96□□□□□ -1.78
ATG4A-204ENST00000372246 TRBV7-1A0A0A6YYK4 115 aa3.96□□□□□ -1.78
ATG4A-204ENST00000372246 MALP21145 153 aa3.96□□□□□ -1.78
ATG4A-204ENST00000372246 C20orf203Q8NBC4 194 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms