RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 C20orf173Q96LM9 149 aa9.59□□□□□ -0.87
SYNCRIP-201ENST00000355238 GTF3C1Q12789 2109 aa9.59□□□□□ -0.87
SYNCRIP-201ENST00000355238 WFDC11Q8NEX6 87 aa9.59□□□□□ -0.87
SYNCRIP-201ENST00000355238 LINC00467Q9BRT7 94 aa9.59□□□□□ -0.87
SYNCRIP-201ENST00000355238 PYGO1Q9Y3Y4 419 aa9.59□□□□□ -0.87
SYNCRIP-201ENST00000355238 SMIM26A0A096LP01 95 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 LINC00310P59036 64 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 CCDC140Q96MF4 163 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 PLA2G2CQ5R387 149 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 SMIM9A6NGZ8 99 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 SLPIP03973 132 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 CACNA1BQ00975 2339 aa9.58□□□□□ -0.88
SYNCRIP-201ENST00000355238 TRBV27A0A0K0K1C4 114 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 IGLV2-11P01706 119 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 Q6JHZ5 121 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 TRBV6-5A0A0K0K1A5 114 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 H0Y9J4 135 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 NRACQ8N912 160 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 SIRPDQ9H106 197 aa9.57□□□□□ -0.88
SYNCRIP-201ENST00000355238 C9orf66Q5T8R8 295 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 IGHV4-61A0A0C4DH41 118 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 M0QY20 66 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 UBE2AP49459 152 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 PRO0255Q9UI72 69 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 ZGRF1Q86YA3 2104 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 SCXQ7RTU7 201 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 FAM19A3Q7Z5A8 133 aa9.56□□□□□ -0.88
SYNCRIP-201ENST00000355238 ZMAT4Q9H898 229 aa9.55□□□□□ -0.88
SYNCRIP-201ENST00000355238 KLK12Q9UKR0 248 aa9.55□□□□□ -0.88
SYNCRIP-201ENST00000355238 LINC00526Q96FQ7 95 aa9.55□□□□□ -0.88
SYNCRIP-201ENST00000355238 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.55□□□□□ -0.886e-7■■■□□ 18.1
SYNCRIP-201ENST00000355238 COL6A6A6NMZ7 2263 aa9.55□□□□□ -0.88
SYNCRIP-201ENST00000355238 SNURFQ9Y675 71 aa9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 LYRM9A8MSI8 78 aa9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 MSMPQ1L6U9 139 aa9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 GRNP28799 593 aaKnown RBP9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 NUP210Q8TEM1 1887 aaPredicted RBP9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 C1orf229Q6ZS94 237 aaPredicted RBP9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 SERP1Q9Y6X1 66 aa9.54□□□□□ -0.88
SYNCRIP-201ENST00000355238 CCL18P55774 89 aa9.53□□□□□ -0.88
SYNCRIP-201ENST00000355238 C4orf3Q8WVX3 66 aa9.53□□□□□ -0.88
SYNCRIP-201ENST00000355238 IGKV4-1P06312 121 aa9.53□□□□□ -0.88
SYNCRIP-201ENST00000355238 ODF3BA8MYP8 253 aa9.53□□□□□ -0.88
SYNCRIP-201ENST00000355238 ABCA4P78363 2273 aa9.52□□□□□ -0.88
SYNCRIP-201ENST00000355238 ZFP36P26651 326 aaKnown RBP9.52□□□□□ -0.88
SYNCRIP-201ENST00000355238 HRCT1Q6UXD1 115 aa9.52□□□□□ -0.88
SYNCRIP-201ENST00000355238 MAP6D1Q9H9H5 199 aa9.52□□□□□ -0.89
SYNCRIP-201ENST00000355238 ALPK3Q96L96 1907 aa9.52□□□□□ -0.89
SYNCRIP-201ENST00000355238 DSCAML1Q8TD84 2053 aa9.52□□□□□ -0.89
SYNCRIP-201ENST00000355238 Q6ZS46 218 aa9.51□□□□□ -0.89
SYNCRIP-201ENST00000355238 SMAD5-AS1Q9Y6J3 95 aa9.51□□□□□ -0.89
SYNCRIP-201ENST00000355238 ESM1Q9NQ30 184 aa9.51□□□□□ -0.89
SYNCRIP-201ENST00000355238 NCOA6Q14686 2063 aaPredicted RBP9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 A6NDX4 124 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 ZFAND3Q9H8U3 227 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 C6orf99Q4VX62 202 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 PIP4P1Q86T03 277 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 K7EQG2 157 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 IGHV4-30-2A0A087WSY4 118 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 REG3AQ06141 175 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 PRR15LQ9BU68 103 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 CNFNQ9BYD5 112 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 IGF1P05019 195 aa9.5□□□□□ -0.89
SYNCRIP-201ENST00000355238 CCKP06307 115 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 URB1-AS1Q96HZ7 61 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 TSHBP01222 138 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 NOTCH4Q99466 2003 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 TRAV7A0A075B6U4 112 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 LINC00269Q8N2A0 174 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 UBE2D1P51668 147 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 Q6ZTI0 123 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 CHCHD10Q8WYQ3 142 aaPredicted RBP9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 PLCE1Q9P212 2302 aa9.49□□□□□ -0.89
SYNCRIP-201ENST00000355238 A6NED7 52 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 POLR2KP53803 58 aaKnown RBP9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 UBE2D3P61077 147 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 UBE2D2P62837 147 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 B9D2Q9BPU9 175 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 PCNX1Q96RV3 2341 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 IGF2-ASQ6U949 168 aa9.48□□□□□ -0.89
SYNCRIP-201ENST00000355238 MIFP14174 115 aa9.47□□□□□ -0.89
SYNCRIP-201ENST00000355238 ZNF106Q9H2Y7 1883 aaKnown RBP9.47□□□□□ -0.89
SYNCRIP-201ENST00000355238 SMIM11BQ8TCY0 68 aa9.47□□□□□ -0.89
SYNCRIP-201ENST00000355238 FSTL3O95633 263 aa9.46□□□□□ -0.89
SYNCRIP-201ENST00000355238 FAM19A5Q7Z5A7 132 aaPredicted RBP9.46□□□□□ -0.9
SYNCRIP-201ENST00000355238 FREM1Q5H8C1 2179 aa9.46□□□□□ -0.9
SYNCRIP-201ENST00000355238 A8MZ25 164 aa9.45□□□□□ -0.9
SYNCRIP-201ENST00000355238 RNASE3P12724 160 aaKnown RBP9.45□□□□□ -0.9
SYNCRIP-201ENST00000355238 EBI3Q14213 229 aa9.45□□□□□ -0.9
SYNCRIP-201ENST00000355238 MED13LQ71F56 2210 aa9.45□□□□□ -0.9
SYNCRIP-201ENST00000355238 TRBV6-8A0A0A6YYG3 113 aa9.45□□□□□ -0.9
SYNCRIP-201ENST00000355238 UBE2D4Q9Y2X8 147 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 PCNX2A6NKB5 2137 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 K7ERS5 55 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 Q6ZQY7 126 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 GPR179Q6PRD1 2367 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 TRBV6-4A0A1B0GX49 114 aa9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 F8W735 103 aaPredicted RBP9.44□□□□□ -0.9
SYNCRIP-201ENST00000355238 CASC2Q6XLA1 102 aa9.43□□□□□ -0.9
SYNCRIP-201ENST00000355238 ADAMTS9Q9P2N4 1935 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms