RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 IGHV4-4A0A075B6R2 117 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 TDRG1Q3Y452 100 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 TIRAPP58753 221 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 Q6ZUT4 128 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 SND1-IT1Q9HBX3 110 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 ADAMTS20P59510 1910 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 DEFB131BA0A096LNP1 70 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 CFC1BP0CG36 223 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 CFC1P0CG37 223 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 SPAG11BQ08648 103 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 GAGE2BQ13066 116 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 A0A1W2PPM0 123 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 INAFM2P0DMQ5 153 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 IL17DQ8TAD2 202 aa11.1□□□□□ -0.63
COL17A1-201ENST00000353479 EXPH5Q8NEV8 1989 aa11.09□□□□□ -0.63
COL17A1-201ENST00000353479 MUSTN1Q8IVN3 82 aa11.09□□□□□ -0.63
COL17A1-201ENST00000353479 CARD19Q96LW7 228 aa11.09□□□□□ -0.63
COL17A1-201ENST00000353479 PKIGQ9Y2B9 76 aa11.09□□□□□ -0.63
COL17A1-201ENST00000353479 DEFB105AQ8NG35 78 aa11.09□□□□□ -0.63
COL17A1-201ENST00000353479 MIFP14174 115 aa11.08□□□□□ -0.64
COL17A1-201ENST00000353479 IGLV2-11P01706 119 aa11.08□□□□□ -0.64
COL17A1-201ENST00000353479 ETDCA0A1B0GVM5 59 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 H3BMG7 143 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 K7EP34 96 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 IFITM1P13164 125 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 ODF1Q14990 250 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 CFAP126Q5VTH2 177 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 ANAPC13Q9BS18 74 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 GAGE12HA6NDE8 117 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 JMJD1CQ15652 2540 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 LINC00269Q8N2A0 174 aa11.07□□□□□ -0.64
COL17A1-201ENST00000353479 ETDBQ3ZM63 59 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 KIR2DL5BA0A0G2JN68 375 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 KIR2DL5BA0A0G2JPC4 375 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 NDUFA7O95182 113 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 EDN2P20800 178 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 KIR2DL5AQ8N109 375 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 NEXN-AS1Q8NBZ9 246 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 GTSF1LQ9H1H1 148 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 A4D1N5 150 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 PROK1P58294 105 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 DSCR8Q96T75 97 aa11.06□□□□□ -0.64
COL17A1-201ENST00000353479 E9PLD3 99 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 TLN2Q9Y4G6 2542 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 PRR9Q5T870 116 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 ZFAND6Q6FIF0 208 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 DCANP1Q8TF63 244 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 LINC00467Q9BRT7 94 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 IGHV4-28A0A0C4DH34 117 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 OXLD1Q5BKU9 147 aa11.05□□□□□ -0.64
COL17A1-201ENST00000353479 NCR3O14931 201 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 PRB2P02812 416 aaPredicted RBP11.04□□□□□ -0.64
COL17A1-201ENST00000353479 REG3AQ06141 175 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 IGHV1-58A0A0C4DH39 117 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 TINCRA0A1B0GVN0 87 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 PRM2P04554 102 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 CXCL5P42830 114 aa11.04□□□□□ -0.64
COL17A1-201ENST00000353479 F8W1H4 67 aa11.03□□□□□ -0.64
COL17A1-201ENST00000353479 HIGD2BQ4VC39 106 aa11.03□□□□□ -0.64
COL17A1-201ENST00000353479 ABCA12Q86UK0 2595 aa11.03□□□□□ -0.64
COL17A1-201ENST00000353479 ZNF462Q96JM2 2506 aa11.02□□□□□ -0.64
COL17A1-201ENST00000353479 Q6ZVH6 145 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 PPDPFLQ8WWR9 84 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 M0QY20 66 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 RS1O15537 224 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 RPL32P62910 135 aaKnown RBP11.02□□□□□ -0.65
COL17A1-201ENST00000353479 HAMPP81172 84 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 ZFYVE26Q68DK2 2539 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 USP9XQ93008 2570 aaPredicted RBP11.02□□□□□ -0.65
COL17A1-201ENST00000353479 C11orf21Q9P2W6 132 aa11.02□□□□□ -0.65
COL17A1-201ENST00000353479 MIR7-3HGQ8N6C7 128 aa11.01□□□□□ -0.65
COL17A1-201ENST00000353479 TNRC6BQ9UPQ9 1833 aaKnown RBP11.01□□□□□ -0.65
COL17A1-201ENST00000353479 CRYGDP07320 174 aa11.01□□□□□ -0.65
COL17A1-201ENST00000353479 UBL5Q9BZL1 73 aa11.01□□□□□ -0.65
COL17A1-201ENST00000353479 ORMDL1Q9P0S3 153 aa11.01□□□□□ -0.65
COL17A1-201ENST00000353479 KLLNB2CW77 178 aa11□□□□□ -0.65
COL17A1-201ENST00000353479 RNASE3P12724 160 aaKnown RBP11□□□□□ -0.65
COL17A1-201ENST00000353479 TRBV6-4A0A1B0GX49 114 aa11□□□□□ -0.65
COL17A1-201ENST00000353479 BAALC-AS2P0C853 105 aa11□□□□□ -0.65
COL17A1-201ENST00000353479 K7EP13 123 aa11□□□□□ -0.65
COL17A1-201ENST00000353479 RNF183Q96D59 192 aa10.99□□□□□ -0.65
COL17A1-201ENST00000353479 RNF185Q96GF1 192 aa10.99□□□□□ -0.65
COL17A1-201ENST00000353479 FXYD2P54710 66 aa10.99□□□□□ -0.65
COL17A1-201ENST00000353479 CHCHD10Q8WYQ3 142 aaPredicted RBP10.99□□□□□ -0.65
COL17A1-201ENST00000353479 DSCAML1Q8TD84 2053 aa10.99□□□□□ -0.65
COL17A1-201ENST00000353479 CRIP2P52943 208 aaPredicted RBP10.99□□□□□ -0.65
COL17A1-201ENST00000353479 RBMY1FQ15415 496 aaKnown RBP10.98□□□□□ -0.65
COL17A1-201ENST00000353479 NPSP0C0P6 89 aa10.98□□□□□ -0.65
COL17A1-201ENST00000353479 TRBV6-8A0A0A6YYG3 113 aa10.98□□□□□ -0.65
COL17A1-201ENST00000353479 NTN5Q8WTR8 489 aaPredicted RBP10.98□□□□□ -0.65
COL17A1-201ENST00000353479 C2CD3Q4AC94 2353 aa10.97□□□□□ -0.65
COL17A1-201ENST00000353479 NFE4Q86UQ8 179 aa10.97□□□□□ -0.65
COL17A1-201ENST00000353479 KIR2DL5BQ8NHK3 375 aa10.97□□□□□ -0.65
COL17A1-201ENST00000353479 IGKV2-24A0A0C4DH68 120 aa10.97□□□□□ -0.65
COL17A1-201ENST00000353479 TRAV10A0A0B4J240 114 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 IGHV4-30-4P0DP06 118 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 ODF3L2Q3SX64 289 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 Q8N976 141 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 HIGD1BQ9P298 99 aa10.96□□□□□ -0.65
COL17A1-201ENST00000353479 UBE2AP49459 152 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms