RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 RAB5BP61020 215 aa13.09□□□□□ -0.31
CHMP4A-201ENST00000347519 BAGE3Q86Y29 109 aa13.09□□□□□ -0.31
CHMP4A-201ENST00000347519 LINC01546A6NGU7 62 aa13.08□□□□□ -0.31
CHMP4A-201ENST00000347519 COTL1Q14019 142 aa13.08□□□□□ -0.31
CHMP4A-201ENST00000347519 SH2D6Q7Z4S9 175 aa13.08□□□□□ -0.31
CHMP4A-201ENST00000347519 SERF1AO75920 110 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 LINC00614P0C842 121 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 NDUFA6P56556 154 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 RNASEKQ6P5S7 137 aaKnown RBP13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 FA2HQ7L5A8 372 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 CHCHD7Q9BUK0 85 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 KIR2DL4Q99706 377 aa13.07□□□□□ -0.32
CHMP4A-201ENST00000347519 TRBV6-8A0A0A6YYG3 113 aa13.06□□□□□ -0.32
CHMP4A-201ENST00000347519 ESDP10768 282 aa13.06□□□□□ -0.32
CHMP4A-201ENST00000347519 FCER1GP30273 86 aa13.06□□□□□ -0.32
CHMP4A-201ENST00000347519 AMTP48728 403 aa13.05□□□□□ -0.32
CHMP4A-201ENST00000347519 TIRAPP58753 221 aa13.05□□□□□ -0.32
CHMP4A-201ENST00000347519 LAGE3Q14657 143 aa13.05□□□□□ -0.32
CHMP4A-201ENST00000347519 PMCHL1Q16048 86 aa13.05□□□□□ -0.32
CHMP4A-201ENST00000347519 DNAH1Q9P2D7 4330 aa13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 COA6Q5JTJ3 125 aaKnown RBP13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 CASC10Q5T4H9 136 aa13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 AP5S1Q9NUS5 200 aa13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 TMA7Q9Y2S6 64 aaKnown RBP13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 LINC00588Q9Y4M8 146 aa13.04□□□□□ -0.32
CHMP4A-201ENST00000347519 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 A0A096LNJ9 63 aa13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 IGHV1-24A0A0C4DH33 117 aa13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 IGKV2-29A2NJV5 120 aaPredicted RBP13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 LELP1Q5T871 98 aa13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 CHCHD1Q96BP2 118 aaKnown RBP13.03□□□□□ -0.32
CHMP4A-201ENST00000347519 TENM2Q9NT68 2774 aa13.02□□□□□ -0.32
CHMP4A-201ENST00000347519 LYSTQ99698 3801 aa13.02□□□□□ -0.32
CHMP4A-201ENST00000347519 RPL39P62891 51 aaKnown RBP13.02□□□□□ -0.33
CHMP4A-201ENST00000347519 TMEM97Q5BJF2 176 aa13.02□□□□□ -0.33
CHMP4A-201ENST00000347519 ALMS1Q8TCU4 4167 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 TRBV25-1A0A075B6N4 114 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 C3orf84H3BNL1 204 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 TCTAP57738 103 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 ORMDL2Q53FV1 153 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 FAM19A2Q8N3H0 131 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 C20orf203Q8NBC4 194 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 TMEM243Q9BU79 118 aa13.01□□□□□ -0.33
CHMP4A-201ENST00000347519 K7EMI3 77 aa13□□□□□ -0.33
CHMP4A-201ENST00000347519 GAGE6Q13070 117 aa13□□□□□ -0.33
CHMP4A-201ENST00000347519 WFDC10BQ8IUB3 73 aa13□□□□□ -0.33
CHMP4A-201ENST00000347519 Q8N3U1 123 aa13□□□□□ -0.33
CHMP4A-201ENST00000347519 RYR3Q15413 4870 aa13□□□□□ -0.33
CHMP4A-201ENST00000347519 CHCHD5Q9BSY4 110 aa12.99□□□□□ -0.33
CHMP4A-201ENST00000347519 MRPS16Q9Y3D3 137 aaKnown RBP12.99□□□□□ -0.33
CHMP4A-201ENST00000347519 HSBP1O75506 76 aa12.98□□□□□ -0.33
CHMP4A-201ENST00000347519 BTF3P20290 206 aaKnown RBP12.98□□□□□ -0.33
CHMP4A-201ENST00000347519 CCL18P55774 89 aa12.98□□□□□ -0.33
CHMP4A-201ENST00000347519 C2orf66Q6UXQ4 117 aa12.98□□□□□ -0.33
CHMP4A-201ENST00000347519 PDZD11Q5EBL8 140 aa12.96□□□□□ -0.33
CHMP4A-201ENST00000347519 TRAV8-6A0A0B4J262 113 aa12.95□□□□□ -0.34
CHMP4A-201ENST00000347519 HBDP02042 147 aa12.95□□□□□ -0.34
CHMP4A-201ENST00000347519 SNRPEP62304 92 aaKnown RBP12.95□□□□□ -0.34
CHMP4A-201ENST00000347519 TOMM6Q96B49 74 aa12.95□□□□□ -0.34
CHMP4A-201ENST00000347519 S100A6P06703 90 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 FGF6P10767 208 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 MPV17L2Q567V2 206 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 LINC00173Q6ZV60 143 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 FAM104AQ969W3 186 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 CYSLTR1Q9Y271 337 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 UBE2D4Q9Y2X8 147 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 C5orf52A6NGY3 159 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 TMEM262E9PQX1 116 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 UBE2L6O14933 153 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 UBE2DNLQ8IWF7 75 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 HIST3H2BBQ8N257 126 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 Q8N976 141 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 OPRPNQ99935 248 aaPredicted RBP12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 UPK3BQ9BT76 320 aa12.94□□□□□ -0.34
CHMP4A-201ENST00000347519 IGLV4-60A0A075B6I1 120 aa12.93□□□□□ -0.34
CHMP4A-201ENST00000347519 RBX1P62877 108 aa12.93□□□□□ -0.34
CHMP4A-201ENST00000347519 DNAH6Q9C0G6 4158 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IGIPA6NJ69 53 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 H7C423 109 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IGHV3-30P01768 117 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IGHV3-33P01772 117 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IGHV3-30-3P0DP02 117 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IGHV3-30-5P0DP03 117 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 MRPL52Q86TS9 123 aaKnown RBP12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 TMEM18Q96B42 140 aa12.92□□□□□ -0.34
CHMP4A-201ENST00000347519 IFITM10A6NMD0 228 aa12.91□□□□□ -0.34
CHMP4A-201ENST00000347519 FABP4P15090 132 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 ZC2HC1BQ5TFG8 222 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 AMMECR1LQ6DCA0 310 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 Q6ZUT4 128 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 SCGB3A1Q96QR1 104 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 TIMM21Q9BVV7 248 aa12.9□□□□□ -0.34
CHMP4A-201ENST00000347519 SIVA1O15304 175 aa12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 G0S2P27469 103 aa12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 RNASE13Q5GAN3 156 aaKnown RBP12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 SPANXA1Q9NS26 97 aa12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 PYGO1Q9Y3Y4 419 aa12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 SACSQ9NZJ4 4579 aa12.89□□□□□ -0.35
CHMP4A-201ENST00000347519 IGLV4-3A0A075B6K6 122 aa12.88□□□□□ -0.35
CHMP4A-201ENST00000347519 A0A1B0GUV1 79 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms