RNA–Protein interactions for RNA: ENST00000344627.10

SGCA-202, Transcript of sarcoglycan alpha, humanhuman

TSL 1 (best) BASIC

Gene SGCA, Length 1,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-202ENST00000344627 TMEM250H0YL14 139 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 UBE2L6O14933 153 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 CEBPGP53567 150 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 NDUFA5Q16718 116 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 UQCC3Q6UW78 93 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 SCXQ7RTU7 201 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 TMEM243Q9BU79 118 aa8.1□□□□□ -1.11
SGCA-202ENST00000344627 IGLV10-54A0A075B6I4 117 aa8.09□□□□□ -1.11
SGCA-202ENST00000344627 IQCJQ1A5X6 159 aa8.09□□□□□ -1.11
SGCA-202ENST00000344627 SMIM15Q7Z3B0 74 aa8.09□□□□□ -1.11
SGCA-202ENST00000344627 OCC1Q8TAD7 63 aa8.09□□□□□ -1.11
SGCA-202ENST00000344627 RPP21Q9H633 154 aaKnown RBP8.09□□□□□ -1.11
SGCA-202ENST00000344627 NIT2Q9NQR4 276 aa8.09□□□□□ -1.11
SGCA-202ENST00000344627 LINC00862A6NCI5 91 aa8.08□□□□□ -1.12
SGCA-202ENST00000344627 COTL1Q14019 142 aa8.08□□□□□ -1.12
SGCA-202ENST00000344627 DGAT2L7PQ6IED9 249 aa8.08□□□□□ -1.12
SGCA-202ENST00000344627 WDR73Q6P4I2 378 aa8.08□□□□□ -1.12
SGCA-202ENST00000344627 K7EN84 100 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 GATCO43716 136 aaKnown RBP8.07□□□□□ -1.12
SGCA-202ENST00000344627 CTRLP40313 264 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 AMTP48728 403 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 REG3AQ06141 175 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 FAM74A3Q4VXF1 159 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 PRR34Q9NV39 138 aa8.07□□□□□ -1.12
SGCA-202ENST00000344627 TRAV26-2A0A0B4J265 109 aa8.06□□□□□ -1.12
SGCA-202ENST00000344627 PRSS1P07477 247 aa8.06□□□□□ -1.12
SGCA-202ENST00000344627 CIRBP-AS1Q8TBR5 109 aa8.06□□□□□ -1.12
SGCA-202ENST00000344627 IGLV4-60A0A075B6I1 120 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 IGKV3OR2-268A0A0C4DH90 116 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 COMMD7Q86VX2 200 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 GATD1Q8NB37 220 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 C20orf203Q8NBC4 194 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 PGLYRP4Q96LB8 373 aa8.05□□□□□ -1.12
SGCA-202ENST00000344627 hDV102S1A0JD36 115 aa8.04□□□□□ -1.12
SGCA-202ENST00000344627 A8MWL6 223 aa8.04□□□□□ -1.12
SGCA-202ENST00000344627 CLRN3Q8NCR9 226 aa8.04□□□□□ -1.12
SGCA-202ENST00000344627 TRAV8-4A0A0B4J246 113 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 A0A1B0GUV1 79 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 SRP19P09132 144 aaKnown RBP8.03□□□□□ -1.12
SGCA-202ENST00000344627 FOXA3P55318 350 aaPredicted RBP8.03□□□□□ -1.12
SGCA-202ENST00000344627 AMMECR1LQ6DCA0 310 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 KRTAP26-1Q6PEX3 210 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 GTSF1Q8WW33 167 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 BORCS7Q96B45 105 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 RPL39LQ96EH5 51 aaKnown RBP8.03□□□□□ -1.12
SGCA-202ENST00000344627 DPH3Q96FX2 82 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 CNFNQ9BYD5 112 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 GFRA4Q9GZZ7 299 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 AP5S1Q9NUS5 200 aa8.03□□□□□ -1.12
SGCA-202ENST00000344627 ZNF727A8MUV8 499 aa8.02□□□□□ -1.13
SGCA-202ENST00000344627 KRTAP10-4P60372 401 aaPredicted RBP8.02□□□□□ -1.13
SGCA-202ENST00000344627 RNASEKQ6P5S7 137 aaKnown RBP8.02□□□□□ -1.13
SGCA-202ENST00000344627 C9orf163Q8N9P6 203 aa8.02□□□□□ -1.13
SGCA-202ENST00000344627 SMIM7Q9BQ49 75 aa8.02□□□□□ -1.13
SGCA-202ENST00000344627 APCSP02743 223 aa8.01□□□□□ -1.13
SGCA-202ENST00000344627 PMCHP20382 165 aa8.01□□□□□ -1.13
SGCA-202ENST00000344627 RPL37AP61513 92 aaKnown RBP8.01□□□□□ -1.13
SGCA-202ENST00000344627 PKHD1L1Q86WI1 4243 aa8□□□□□ -1.13
SGCA-202ENST00000344627 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8□□□□□ -1.13
SGCA-202ENST00000344627 IGKV2-29A2NJV5 120 aaPredicted RBP8□□□□□ -1.13
SGCA-202ENST00000344627 GAGE12HA6NDE8 117 aa8□□□□□ -1.13
SGCA-202ENST00000344627 PNRC1Q12796 327 aaPredicted RBP8□□□□□ -1.13
SGCA-202ENST00000344627 NAT8Q9UHE5 227 aa8□□□□□ -1.13
SGCA-202ENST00000344627 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.99□□□□□ -1.13
SGCA-202ENST00000344627 SDHAF1A6NFY7 115 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 NCR2O95944 276 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 TMEM241Q24JQ0 296 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 CFAP161Q6P656 301 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 FAM231DQ6ZW35 169 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 FAT3Q8TDW7 4589 aa7.99□□□□□ -1.13
SGCA-202ENST00000344627 LRP1Q07954 4544 aaKnown RBP7.99□□□□□ -1.13
SGCA-202ENST00000344627 IGHV3-64A0A075B6Q5 118 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 TMEM218A2RU14 115 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 SRSF3P84103 164 aaKnown RBP7.98□□□□□ -1.13
SGCA-202ENST00000344627 RNF185Q96GF1 192 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 SEC11CQ9BY50 192 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 ST20Q9HBF5 79 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 PLA2G2DQ9UNK4 145 aa7.98□□□□□ -1.13
SGCA-202ENST00000344627 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
SGCA-202ENST00000344627 A0A1B0GUT8 65 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 HIGD1CA8MV81 97 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 F8W036 122 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 I3L3M4 83 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 FGF6P10767 208 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 CNBPP62633 177 aaKnown RBP7.97□□□□□ -1.13
SGCA-202ENST00000344627 CT83Q5H943 113 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 SDIM1Q6ZPB5 146 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 Q6ZRU5 148 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 TSKUQ8WUA8 353 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 TMEM101Q96IK0 257 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 BTF3L4Q96K17 158 aa7.97□□□□□ -1.13
SGCA-202ENST00000344627 C9JQL5 133 aa7.96□□□□□ -1.14
SGCA-202ENST00000344627 H7C423 109 aa7.96□□□□□ -1.14
SGCA-202ENST00000344627 HIGD2BQ4VC39 106 aa7.96□□□□□ -1.14
SGCA-202ENST00000344627 LINC01551Q86U37 167 aa7.96□□□□□ -1.14
SGCA-202ENST00000344627 CHCHD10Q8WYQ3 142 aaPredicted RBP7.96□□□□□ -1.14
SGCA-202ENST00000344627 PANO1I0J062 215 aa7.95□□□□□ -1.14
SGCA-202ENST00000344627 RIGQ13278 110 aa7.95□□□□□ -1.14
SGCA-202ENST00000344627 CIRBPQ14011 172 aaKnown RBP7.95□□□□□ -1.14
SGCA-202ENST00000344627 OSTCQ9NRP0 149 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms