RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RPL39P62891 51 aaKnown RBP2.93□□□□□ -1.94
MCF2-201ENST00000338585 FHL2Q14192 279 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 MAJINQ3KP22 176 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 C2orf66Q6UXQ4 117 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 IFI27L1Q96BM0 104 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 KIR2DL4Q99706 377 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 MAP1LC3CQ9BXW4 147 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 DKK2Q9UBU2 259 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 DNAH3Q8TD57 4116 aa2.93□□□□□ -1.94
MCF2-201ENST00000338585 TRGV4A0A0C4DH28 118 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 GAGE12JA6NER3 117 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 I3L3M4 83 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 K7EQD1 137 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 MIFP14174 115 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 GAGE1Q13065 139 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 GAGE4Q13068 117 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 GAGE5Q13069 117 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 GAGE13Q4V321 117 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 ORMDL2Q53FV1 153 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 SBSPONQ8IVN8 264 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 ZNRF2Q8NHG8 242 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 TOMM6Q96B49 74 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 PRO1933Q9H354 126 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 ZMAT5Q9UDW3 170 aaKnown RBP2.92□□□□□ -1.94
MCF2-201ENST00000338585 TP53TG1Q9Y2A0 90 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 TEX43Q6ZNM6 134 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 ZNF664Q8N3J9 261 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 TENM3Q9P273 2699 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 TRBV7-3A0A075B6L6 115 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 LYRM9A8MSI8 78 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 K7EMI3 77 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 KPRPQ5T749 579 aaPredicted RBP2.92□□□□□ -1.94
MCF2-201ENST00000338585 ZC2HC1BQ5TFG8 222 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 LINC01545Q5VT33 79 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 PET117Q6UWS5 81 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 MRAPQ8TCY5 172 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 DNAJC30Q96LL9 226 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 SCGB3A1Q96QR1 104 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 OPRPNQ99935 248 aaPredicted RBP2.92□□□□□ -1.94
MCF2-201ENST00000338585 PAM16Q9Y3D7 125 aa2.92□□□□□ -1.94
MCF2-201ENST00000338585 TRBV10-1A0A0K0K1A3 114 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 TRBV6-4A0A1B0GX49 114 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 hDV102S1A0JD36 115 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 PRSS1P07477 247 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 DAD1P61803 113 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 S100A12P80511 92 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 RPL36AP83881 106 aaKnown RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 RHOHQ15669 191 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 DEFB121Q5J5C9 76 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 CEMP1Q6PRD7 247 aaPredicted RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 C20orf203Q8NBC4 194 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 RPL36ALQ969Q0 106 aaKnown RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 CHCHD7Q9BUK0 85 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 HHLA3Q9XRX5 114 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 CYSLTR1Q9Y271 337 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 A0A0J9YY99 117 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 C20orf202A1L168 122 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 IGKV2-29A2NJV5 120 aaPredicted RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 IGIPA6NJ69 53 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.91□□□□□ -1.94
MCF2-201ENST00000338585 ATP5LO75964 103 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 SPART-AS1P0CW21 52 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 HTN3P15516 51 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 TCTAP57738 103 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 UBE2D3P61077 147 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 UBE2D2P62837 147 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 NTM-AS1Q6ZSK4 140 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 ERASQ7Z444 233 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 VAMP8Q9BV40 100 aa2.91□□□□□ -1.94
MCF2-201ENST00000338585 CIDEAO60543 219 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 CRYBA4P53673 196 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 COTL1Q14019 142 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 LGALS9CQ6DKI2 356 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 BAALCQ8WXS3 180 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 VSIG2Q96IQ7 327 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 TP73-AS1Q9UF72 201 aa2.9□□□□□ -1.94
MCF2-201ENST00000338585 TRAV9-2A0A087WT02 112 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 A0A096LPF7 62 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 A0A0J9YWU9 116 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 F5H768 121 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 LINC00694P0DN24 101 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 GYPEP15421 78 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 C12orf74Q32Q52 190 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 SPATA45Q537H7 98 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 RNASE13Q5GAN3 156 aaKnown RBP2.9□□□□□ -1.95
MCF2-201ENST00000338585 Q6ZN92 141 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 FAM104AQ969W3 186 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 PRADC1Q9BSG0 188 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 ZMAT4Q9H898 229 aa2.9□□□□□ -1.95
MCF2-201ENST00000338585 MRPL35Q9NZE8 188 aaKnown RBP2.9□□□□□ -1.95
MCF2-201ENST00000338585 TRAV26-1A0A087WT03 109 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 PRSS29PA6NIE9 313 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 ATP5G1P05496 136 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 DAZ4Q86SG3 579 aaKnown RBP2.89□□□□□ -1.95
MCF2-201ENST00000338585 STPG4Q8N801 248 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 DAZ3Q9NR90 486 aaKnown RBP2.89□□□□□ -1.95
MCF2-201ENST00000338585 PRO0255Q9UI72 69 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 IGLV4-3A0A075B6K6 122 aa2.89□□□□□ -1.95
MCF2-201ENST00000338585 A0A087WX48 190 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms