RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 AMTP48728 403 aa10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 PKIAP61925 76 aa10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 TNP2Q05952 138 aa10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 ATRAIDQ6UW56 229 aa10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 Q6ZRN7 208 aaPredicted RBP10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 TMEM243Q9BU79 118 aa10.7□□□□□ -0.7
CCDC28A-201ENST00000332797 PPP1R17O96001 155 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 PMCHP20382 165 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 LAGE3Q14657 143 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 MPV17L2Q567V2 206 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 NRACQ8N912 160 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 TMEM70Q9BUB7 260 aa10.69□□□□□ -0.7
CCDC28A-201ENST00000332797 D6R8Y8 96 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 I3L3M4 83 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 KLK12Q9UKR0 248 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 APCSP02743 223 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 S100PP25815 95 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 ELOBQ15370 118 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 Q8N976 141 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 SMCO4Q9NRQ5 59 aa10.68□□□□□ -0.7
CCDC28A-201ENST00000332797 A0A1B0GVY2 172 aa10.67□□□□□ -0.7
CCDC28A-201ENST00000332797 UBE2L6O14933 153 aa10.67□□□□□ -0.7
CCDC28A-201ENST00000332797 POLR2KP53803 58 aaKnown RBP10.67□□□□□ -0.7
CCDC28A-201ENST00000332797 SUMO2P61956 95 aaKnown RBP10.67□□□□□ -0.7
CCDC28A-201ENST00000332797 PKD1P98161 4303 aa10.66□□□□□ -0.7
CCDC28A-201ENST00000332797 TRAV9-1A0A075B6T8 112 aa10.66□□□□□ -0.7
CCDC28A-201ENST00000332797 TRAV8-3A0A0A6YYJ7 113 aa10.66□□□□□ -0.7
CCDC28A-201ENST00000332797 ANGP03950 147 aaKnown RBP10.66□□□□□ -0.7
CCDC28A-201ENST00000332797 RBX1P62877 108 aa10.66□□□□□ -0.7
CCDC28A-201ENST00000332797 TRBV27A0A0K0K1C4 114 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 PSCAO43653 123 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 TNFRSF6BO95407 300 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 TSHBP01222 138 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 PPBPP02775 128 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 ORMDL3Q8N138 153 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 UBE2WQ96B02 151 aa10.65□□□□□ -0.7
CCDC28A-201ENST00000332797 VCYO14598 125 aa10.64□□□□□ -0.71
CCDC28A-201ENST00000332797 NPYP01303 97 aa10.64□□□□□ -0.71
CCDC28A-201ENST00000332797 CRPP02741 224 aa10.64□□□□□ -0.71
CCDC28A-201ENST00000332797 TMEM136Q6ZRR5 245 aa10.64□□□□□ -0.71
CCDC28A-201ENST00000332797 TRBV24-1A0A075B6N3 115 aa10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 IGKV2-29A2NJV5 120 aaPredicted RBP10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 FCER1GP30273 86 aa10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 PRELID3AQ96N28 172 aa10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 C20orf78Q9BR46 151 aa10.63□□□□□ -0.71
CCDC28A-201ENST00000332797 SCO1O75880 301 aa10.62□□□□□ -0.71
CCDC28A-201ENST00000332797 CLPSL2Q6UWE3 100 aa10.62□□□□□ -0.71
CCDC28A-201ENST00000332797 KIR2DL4Q99706 377 aa10.62□□□□□ -0.71
CCDC28A-201ENST00000332797 TM2D2Q9BX73 214 aa10.62□□□□□ -0.71
CCDC28A-201ENST00000332797 PHOX2AO14813 284 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 Q0VG73 95 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 AMMECR1LQ6DCA0 310 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 ENHOQ6UWT2 76 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 CBLN2Q8IUK8 224 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 LINC00269Q8N2A0 174 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 RMI2Q96E14 147 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 DNAH11Q96DT5 4516 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 IGLV4-60A0A075B6I1 120 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 IGKV2D-24A0A075B6R9 120 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 A0A1B0GUV1 79 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 RPL32P62910 135 aaKnown RBP10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 C20orf203Q8NBC4 194 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 SMIM2Q9BVW6 85 aa10.61□□□□□ -0.71
CCDC28A-201ENST00000332797 H7C423 109 aa10.6□□□□□ -0.71
CCDC28A-201ENST00000332797 ESDP10768 282 aa10.6□□□□□ -0.71
CCDC28A-201ENST00000332797 RNASEKQ6P5S7 137 aaKnown RBP10.6□□□□□ -0.71
CCDC28A-201ENST00000332797 A0A087WTM6 91 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 EREGO14944 169 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 HLA-DQA1P01909 254 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 FGF6P10767 208 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 LAMTOR2Q9Y2Q5 125 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 COX11Q9Y6N1 276 aa10.59□□□□□ -0.71
CCDC28A-201ENST00000332797 REG3AQ06141 175 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 MIAQ16674 131 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 YPEL4Q96NS1 127 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 C1orf43Q9BWL3 253 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 GNB1LQ9BYB4 327 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 PRR34Q9NV39 138 aa10.58□□□□□ -0.72
CCDC28A-201ENST00000332797 TGIF2-C20orf24A0A0A6YYL0 155 aa10.57□□□□□ -0.72
CCDC28A-201ENST00000332797 KIAA1644Q3SXP7 199 aa10.57□□□□□ -0.72
CCDC28A-201ENST00000332797 COX19Q49B96 90 aa10.57□□□□□ -0.72
CCDC28A-201ENST00000332797 SPATA12Q7Z6I5 190 aa10.57□□□□□ -0.72
CCDC28A-201ENST00000332797 MAP1LC3AQ9H492 121 aa10.57□□□□□ -0.72
CCDC28A-201ENST00000332797 BIRC6Q9NR09 4857 aa10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 LOC389332A0A1B0GUA5 103 aa10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 TCAPO15273 167 aa10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 ZNF25P17030 456 aaPredicted RBP10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 TMEM101Q96IK0 257 aa10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 PKHD1P08F94 4074 aa10.56□□□□□ -0.72
CCDC28A-201ENST00000332797 LRCOL1A6NCL2 159 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 IGLV10-54A0A075B6I4 117 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 IGKV3OR2-268A0A0C4DH90 116 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 COLCA2A8K830 154 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 MT-ND6P03923 174 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 KRTAP10-2P60368 255 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 MRPL52Q86TS9 123 aaKnown RBP10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 MAPKAPK5-AS1Q8N8E1 139 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 OR5A1Q8NGJ0 315 aa10.55□□□□□ -0.72
CCDC28A-201ENST00000332797 PRSS47A8MTI9 375 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms