RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 TIMM21Q9BVV7 248 aa13.38□□□□□ -0.27
CLSTN3-202ENST00000331148 COX6CP09669 75 aa13.38□□□□□ -0.27
CLSTN3-202ENST00000331148 DUX3Q96PT4 197 aa13.38□□□□□ -0.27
CLSTN3-202ENST00000331148 CHCHD5Q9BSY4 110 aa13.38□□□□□ -0.27
CLSTN3-202ENST00000331148 TRBV7-7A0A0K0K1E9 115 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 B4DSR2 109 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 ADAMTSL4-AS1Q5T5F5 129 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 SPANXDQ9BXN6 97 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 SPANXCQ9NY87 97 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 FBN2P35556 2912 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 TRAV12-3A0A0B4J271 114 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 LST1O00453 97 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 TMEM219Q86XT9 240 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 SPXQ9BT56 116 aa13.37□□□□□ -0.27
CLSTN3-202ENST00000331148 Q6ZSV7 163 aa13.36□□□□□ -0.27
CLSTN3-202ENST00000331148 C9orf85Q96MD7 179 aa13.36□□□□□ -0.27
CLSTN3-202ENST00000331148 VPS13CQ709C8 3753 aa13.36□□□□□ -0.27
CLSTN3-202ENST00000331148 USP9YO00507 2555 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-202ENST00000331148 CELSR2Q9HCU4 2923 aa13.35□□□□□ -0.27
CLSTN3-202ENST00000331148 IGHV3-16A0A0C4DH30 117 aa13.35□□□□□ -0.27
CLSTN3-202ENST00000331148 MIAQ16674 131 aa13.35□□□□□ -0.27
CLSTN3-202ENST00000331148 TRAV8-3A0A0A6YYJ7 113 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 I3L3M4 83 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 LINC01587Q99440 93 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 TRGV11A0A075B6L2 103 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 IGHV3OR16-10A0A075B7F0 116 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 DEFB113Q30KQ7 82 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 RHPN1-AS1Q9BWJ2 59 aa13.34□□□□□ -0.27
CLSTN3-202ENST00000331148 NDUFA12Q9UI09 145 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 ANKRD17O75179 2603 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 NPC2P61916 151 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 LRRC75A-AS1Q8N1F1 130 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 TMEM126AQ9H061 195 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 MOB4Q9Y3A3 225 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 TNFRSF18Q9Y5U5 241 aa13.33□□□□□ -0.28
CLSTN3-202ENST00000331148 A0A096LNT2 108 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 BRI3O95415 125 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 CD28P10747 220 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 MRPS36P82909 103 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 BRD3OSQ6XYD6 125 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 TMEM61Q8N0U2 210 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 C3orf56Q8N813 242 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 TMEM101Q96IK0 257 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 IGHV1-58A0A0C4DH39 117 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 IGHV3-11P01762 117 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 LINC01356Q8N9X3 169 aa13.32□□□□□ -0.28
CLSTN3-202ENST00000331148 CENPEQ02224 2701 aa13.31□□□□□ -0.28
CLSTN3-202ENST00000331148 FAM104AQ969W3 186 aa13.31□□□□□ -0.28
CLSTN3-202ENST00000331148 IGHV4-38-2P0DP08 117 aa13.3□□□□□ -0.28
CLSTN3-202ENST00000331148 CSMD2Q7Z408 3487 aa13.3□□□□□ -0.28
CLSTN3-202ENST00000331148 TENM4Q6N022 2769 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 SVEP1Q4LDE5 3571 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 PYGO1Q9Y3Y4 419 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 PTPN13Q12923 2485 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 MAP1AP78559 2803 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 FAM236AA0A1B0GUQ0 79 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 FAM236BA0A1B0GV22 79 aa13.29□□□□□ -0.28
CLSTN3-202ENST00000331148 VSIG2Q96IQ7 327 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 YAE1D1Q9NRH1 226 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 POLQO75417 2590 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 ID1P41134 155 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 MAPK1IP1LQ8NDC0 245 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 VPREB3Q9UKI3 123 aa13.28□□□□□ -0.28
CLSTN3-202ENST00000331148 TRAV12-2A0A075B6T6 113 aa13.27□□□□□ -0.28
CLSTN3-202ENST00000331148 A8MZ25 164 aa13.27□□□□□ -0.28
CLSTN3-202ENST00000331148 AVPP01185 164 aa13.27□□□□□ -0.28
CLSTN3-202ENST00000331148 DAZ1Q9NQZ3 744 aaKnown RBP13.27□□□□□ -0.28
CLSTN3-202ENST00000331148 DOPEY2Q9Y3R5 2298 aa13.27□□□□□ -0.29
CLSTN3-202ENST00000331148 EDN2P20800 178 aa13.27□□□□□ -0.29
CLSTN3-202ENST00000331148 RNASE13Q5GAN3 156 aaKnown RBP13.27□□□□□ -0.29
CLSTN3-202ENST00000331148 CEMP1Q6PRD7 247 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-202ENST00000331148 USMG5Q96IX5 58 aa13.27□□□□□ -0.29
CLSTN3-202ENST00000331148 HIST2H2BCQ6DN03 193 aa13.26□□□□□ -0.29
CLSTN3-202ENST00000331148 DCANP1Q8TF63 244 aa13.26□□□□□ -0.29
CLSTN3-202ENST00000331148 IMUPQ9GZP8 106 aa13.26□□□□□ -0.29
CLSTN3-202ENST00000331148 ACYP1P07311 99 aa13.25□□□□□ -0.29
CLSTN3-202ENST00000331148 TMEM95Q3KNT9 176 aa13.25□□□□□ -0.29
CLSTN3-202ENST00000331148 J3QLI3 93 aa13.25□□□□□ -0.29
CLSTN3-202ENST00000331148 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLSTN3-202ENST00000331148 TINCRA0A1B0GVN0 87 aa13.24□□□□□ -0.29
CLSTN3-202ENST00000331148 ABCA12Q86UK0 2595 aa13.24□□□□□ -0.29
CLSTN3-202ENST00000331148 IGHV1OR15-1A0A075B7D0 117 aa13.24□□□□□ -0.29
CLSTN3-202ENST00000331148 TIMM17BO60830 172 aa13.24□□□□□ -0.29
CLSTN3-202ENST00000331148 IGKV3-20P01619 116 aa13.24□□□□□ -0.29
CLSTN3-202ENST00000331148 Q96MF0 132 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 PPDPFQ9H3Y8 114 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 H3BUA1 57 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 PF4V1P10720 104 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 DAND5Q8N907 189 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 SMCR5Q8TEV8 140 aa13.23□□□□□ -0.29
CLSTN3-202ENST00000331148 IGHV4-31P0DP07 118 aa13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 NAV2Q8IVL1 2488 aa13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 PRRC2AP48634 2157 aaKnown RBP13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 CELSR1Q9NYQ6 3014 aa13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 APCP25054 2843 aa13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 DUX5Q96PT3 197 aa13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 CITED2Q99967 270 aaPredicted RBP13.22□□□□□ -0.29
CLSTN3-202ENST00000331148 H3BUX3 64 aa13.2□□□□□ -0.3
CLSTN3-202ENST00000331148 C9orf153Q5TBE3 101 aa13.2□□□□□ -0.3
CLSTN3-202ENST00000331148 KRTAP1-3Q8IUG1 177 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms