RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 A0A1B0GV90 55 aa12.08□□□□□ -0.47
DDX41-201ENST00000330503 NMUP48645 174 aa12.08□□□□□ -0.47
DDX41-201ENST00000330503 CHCHD7Q9BUK0 85 aa12.08□□□□□ -0.47
DDX41-201ENST00000330503 X6R8D5 127 aa12.08□□□□□ -0.47
DDX41-201ENST00000330503 DLEU1O43261 78 aa12.08□□□□□ -0.48
DDX41-201ENST00000330503 HINT1P49773 126 aaPredicted RBP12.08□□□□□ -0.48
DDX41-201ENST00000330503 PHLDA1Q8WV24 401 aaPredicted RBP12.08□□□□□ -0.48
DDX41-201ENST00000330503 IGLV4-69A0A075B6H9 119 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 SLC25A29Q8N8R3 303 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 ZNRF2Q8NHG8 242 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 FAM104AQ969W3 186 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 TRGV2A0A075B6R0 118 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 K7EQD1 137 aa12.07□□□□□ -0.48
DDX41-201ENST00000330503 FBN1P35555 2871 aaKnown RBP12.06□□□□□ -0.48
DDX41-201ENST00000330503 EMP1P54849 157 aa12.06□□□□□ -0.48
DDX41-201ENST00000330503 PRIMA1Q86XR5 153 aa12.06□□□□□ -0.48
DDX41-201ENST00000330503 TTTY13Q9BZ97 58 aa12.06□□□□□ -0.48
DDX41-201ENST00000330503 TRBV7-3A0A075B6L6 115 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 TRBV10-1A0A0K0K1A3 114 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 KIR2DL5BQ8NHK3 375 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 PYGO1Q9Y3Y4 419 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 IGLV4-3A0A075B6K6 122 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 MPV17L2Q567V2 206 aa12.05□□□□□ -0.48
DDX41-201ENST00000330503 C11orf86A6NJI1 115 aa12.04□□□□□ -0.48
DDX41-201ENST00000330503 ZMAT5Q9UDW3 170 aaKnown RBP12.04□□□□□ -0.48
DDX41-201ENST00000330503 SMIM9A6NGZ8 99 aa12.04□□□□□ -0.48
DDX41-201ENST00000330503 COTL1Q14019 142 aa12.04□□□□□ -0.48
DDX41-201ENST00000330503 CIDEAO60543 219 aa12.03□□□□□ -0.48
DDX41-201ENST00000330503 FHL2Q14192 279 aa12.03□□□□□ -0.48
DDX41-201ENST00000330503 CEMP1Q6PRD7 247 aaPredicted RBP12.03□□□□□ -0.48
DDX41-201ENST00000330503 LINC00612Q8N6U2 182 aa12.03□□□□□ -0.48
DDX41-201ENST00000330503 MAPKAPK5-AS1Q8N8E1 139 aa12.03□□□□□ -0.48
DDX41-201ENST00000330503 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.02□□□□□ -0.48
DDX41-201ENST00000330503 IGKV2-29A2NJV5 120 aaPredicted RBP12.02□□□□□ -0.48
DDX41-201ENST00000330503 SIVA1O15304 175 aa12.02□□□□□ -0.48
DDX41-201ENST00000330503 UBE2D3P61077 147 aa12.02□□□□□ -0.48
DDX41-201ENST00000330503 UBE2D2P62837 147 aa12.02□□□□□ -0.48
DDX41-201ENST00000330503 RPL36AP83881 106 aaKnown RBP12.02□□□□□ -0.48
DDX41-201ENST00000330503 RPL36ALQ969Q0 106 aaKnown RBP12.02□□□□□ -0.48
DDX41-201ENST00000330503 CMYA5Q8N3K9 4069 aa12.02□□□□□ -0.49
DDX41-201ENST00000330503 APOC4P55056 127 aa12.02□□□□□ -0.49
DDX41-201ENST00000330503 C3orf56Q8N813 242 aa12.02□□□□□ -0.49
DDX41-201ENST00000330503 GAGE12JA6NER3 117 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 GAGE1Q13065 139 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 GAGE4Q13068 117 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 GAGE5Q13069 117 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 DEFB135Q30KP9 77 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 GAGE13Q4V321 117 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 OXLD1Q5BKU9 147 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 COL5A1-AS1Q5SY13 56 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 UBE2D4Q9Y2X8 147 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 NBEAL2Q6ZNJ1 2754 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 LOC100131303A0A0U1RQF7 123 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 TRBV6-4A0A1B0GX49 114 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 BVES-AS1Q5T3Y7 98 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 AMELXQ99217 191 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 VCX2Q9H322 139 aa12.01□□□□□ -0.49
DDX41-201ENST00000330503 TRGV4A0A0C4DH28 118 aa12□□□□□ -0.49
DDX41-201ENST00000330503 PAPPA-AS1Q5QFB9 102 aa12□□□□□ -0.49
DDX41-201ENST00000330503 NTM-AS1Q6ZSK4 140 aa12□□□□□ -0.49
DDX41-201ENST00000330503 IGHV4-30-4P0DP06 118 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 DEFB130BP0DP73 79 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 DEFB130AP0DP74 79 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 KRTAP10-11P60412 298 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 SHISA2Q6UWI4 295 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 DAZ4Q86SG3 579 aaKnown RBP11.99□□□□□ -0.49
DDX41-201ENST00000330503 NFE4Q86UQ8 179 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 DAZ3Q9NR90 486 aaKnown RBP11.99□□□□□ -0.49
DDX41-201ENST00000330503 TRAV8-6A0A0B4J262 113 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 E9PLD3 99 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 C12orf54Q6X4T0 127 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 SPANXA1Q9NS26 97 aa11.99□□□□□ -0.49
DDX41-201ENST00000330503 NPSP0C0P6 89 aa11.98□□□□□ -0.49
DDX41-201ENST00000330503 CRYBA4P53673 196 aa11.98□□□□□ -0.49
DDX41-201ENST00000330503 TMEM97Q5BJF2 176 aa11.98□□□□□ -0.49
DDX41-201ENST00000330503 OR11H2Q8NH07 326 aa11.98□□□□□ -0.49
DDX41-201ENST00000330503 TRBV25-1A0A075B6N4 114 aa11.97□□□□□ -0.49
DDX41-201ENST00000330503 RNASE13Q5GAN3 156 aaKnown RBP11.97□□□□□ -0.49
DDX41-201ENST00000330503 PRADC1Q9BSG0 188 aa11.97□□□□□ -0.49
DDX41-201ENST00000330503 STAB1Q9NY15 2570 aa11.97□□□□□ -0.49
DDX41-201ENST00000330503 A0A0J9YXV3 536 aa11.96□□□□□ -0.49
DDX41-201ENST00000330503 HIGD1BQ9P298 99 aa11.96□□□□□ -0.49
DDX41-201ENST00000330503 SBSPONQ8IVN8 264 aa11.96□□□□□ -0.5
DDX41-201ENST00000330503 IGHV4-28A0A0C4DH34 117 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 DEFB4AO15263 64 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 TMEM170BQ5T4T1 132 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 FAM222AQ5U5X8 452 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 Q6ZUT4 128 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 CHAC1Q9BUX1 264 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 TIMM21Q9BVV7 248 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 LINC00694P0DN24 101 aa11.95□□□□□ -0.5
DDX41-201ENST00000330503 LYRM9A8MSI8 78 aa11.94□□□□□ -0.5
DDX41-201ENST00000330503 HSD52Q0P140 79 aa11.94□□□□□ -0.5
DDX41-201ENST00000330503 LURAP1LQ8IV03 231 aa11.94□□□□□ -0.5
DDX41-201ENST00000330503 RNF183Q96D59 192 aa11.94□□□□□ -0.5
DDX41-201ENST00000330503 MRPS36P82909 103 aaKnown RBP11.93□□□□□ -0.5
DDX41-201ENST00000330503 EGFEM1PQ0D2K5 195 aa11.93□□□□□ -0.5
DDX41-201ENST00000330503 Q8NAQ8 132 aa11.93□□□□□ -0.5
DDX41-201ENST00000330503 GTSF1LQ9H1H1 148 aa11.93□□□□□ -0.5
DDX41-201ENST00000330503 MYMXA0A1B0GTQ4 84 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms