RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TMEM223A0PJW6 202 aa10.56□□□□□ -0.72
CSPG4-201ENST00000308508 IBA57-AS1B1ANH7 110 aa10.55□□□□□ -0.72
CSPG4-201ENST00000308508 WT1P19544 449 aaPredicted RBP10.55□□□□□ -0.72
CSPG4-201ENST00000308508 LOXL1Q08397 574 aaPredicted RBP10.55□□□□□ -0.72
CSPG4-201ENST00000308508 MRPS36P82909 103 aaKnown RBP10.55□□□□□ -0.72
CSPG4-201ENST00000308508 A0A0J9YX75 114 aa10.55□□□□□ -0.72
CSPG4-201ENST00000308508 CEMP1Q6PRD7 247 aaPredicted RBP10.55□□□□□ -0.72
CSPG4-201ENST00000308508 DSCAMO60469 2012 aa10.55□□□□□ -0.72
CSPG4-201ENST00000308508 SNURFQ9Y675 71 aa10.55□□□□□ -0.72
CSPG4-201ENST00000308508 LINC00308Q8TCZ7 52 aa10.54□□□□□ -0.72
CSPG4-201ENST00000308508 SERP1Q9Y6X1 66 aa10.54□□□□□ -0.72
CSPG4-201ENST00000308508 HIGD2AQ9BW72 106 aa10.54□□□□□ -0.72
CSPG4-201ENST00000308508 ODF3Q96PU9 254 aa10.54□□□□□ -0.72
CSPG4-201ENST00000308508 PTPRQQ9UMZ3 2332 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 IGLV2-14P01704 120 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 RBX1P62877 108 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 LY6G6EA0A0G2JKS1 128 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 SPRNQ5BIV9 151 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 U3KQA8 63 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 DEFB135Q30KP9 77 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 KLK5Q9Y337 293 aaPredicted RBP10.53□□□□□ -0.72
CSPG4-201ENST00000308508 THSD7BQ9C0I4 1608 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 LTBP1Q14766 1721 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 REG3AQ06141 175 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 SIRPDQ9H106 197 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 CCKP06307 115 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 LINC00269Q8N2A0 174 aa10.53□□□□□ -0.72
CSPG4-201ENST00000308508 SLPIP03973 132 aa10.52□□□□□ -0.73
CSPG4-201ENST00000308508 RNF138Q8WVD3 245 aa10.52□□□□□ -0.73
CSPG4-201ENST00000308508 MRPS12O15235 138 aaKnown RBP10.51□□□□□ -0.73
CSPG4-201ENST00000308508 LINC00467Q9BRT7 94 aa10.51□□□□□ -0.73
CSPG4-201ENST00000308508 SPG11Q96JI7 2443 aa10.51□□□□□ -0.73
CSPG4-201ENST00000308508 COL4A6Q14031 1691 aa10.51□□□□□ -0.73
CSPG4-201ENST00000308508 CCDC179H3BU77 68 aa10.51□□□□□ -0.73
CSPG4-201ENST00000308508 ODF3L1Q8IXM7 274 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 SMIM26A0A096LP01 95 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 CSPG4Q6UVK1 2322 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 IGHV4-61A0A0C4DH41 118 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 Q8N9L7 120 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 C11orf1Q9H5F2 150 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 ATG2AQ2TAZ0 1938 aa10.5□□□□□ -0.73
CSPG4-201ENST00000308508 GDF5OSQ5U4N7 250 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 CDKN2A-AS1Q9UH64 79 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 TRBV27A0A0K0K1C4 114 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 E7EUB6 86 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 DEFB113Q30KQ7 82 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 C1orf158Q8N1D5 194 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 CHCHD10Q8WYQ3 142 aaPredicted RBP10.49□□□□□ -0.73
CSPG4-201ENST00000308508 ZNF22P17026 224 aaPredicted RBP10.49□□□□□ -0.73
CSPG4-201ENST00000308508 MYCNOSP40205 109 aa10.49□□□□□ -0.73
CSPG4-201ENST00000308508 IGLV4-3A0A075B6K6 122 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 IGKV2-24A0A0C4DH68 120 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 FAM19A1Q7Z5A9 133 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 C3orf84H3BNL1 204 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 INSL3P51460 131 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 IGLV2-8P01709 118 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 FAM222AQ5U5X8 452 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 MUC4Q99102 2169 aa10.48□□□□□ -0.73
CSPG4-201ENST00000308508 DEFB4AO15263 64 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 ZNF80P51504 273 aaPredicted RBP10.47□□□□□ -0.73
CSPG4-201ENST00000308508 MAP6D1Q9H9H5 199 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 TP73-AS1Q9UF72 201 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 IGLV1-47P01700 117 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 DEFB1P60022 68 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 UNQ9165/PRO28630Q6UXU0 137 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 U3KQK5 164 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 IGHV4-30-2A0A087WSY4 118 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 LINC00694P0DN24 101 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 A0A0J9YWU9 116 aa10.47□□□□□ -0.73
CSPG4-201ENST00000308508 CFAP126Q5VTH2 177 aa10.46□□□□□ -0.73
CSPG4-201ENST00000308508 LINC00322Q6ZN03 302 aaPredicted RBP10.46□□□□□ -0.73
CSPG4-201ENST00000308508 NUP210LQ5VU65 1888 aa10.46□□□□□ -0.73
CSPG4-201ENST00000308508 IGKV1D-37A0A075B6S9 117 aa10.46□□□□□ -0.74
CSPG4-201ENST00000308508 PMAIP1Q13794 54 aa10.46□□□□□ -0.74
CSPG4-201ENST00000308508 MAPKAPK5-AS1Q8N8E1 139 aa10.46□□□□□ -0.74
CSPG4-201ENST00000308508 ZFAND3Q9H8U3 227 aa10.46□□□□□ -0.74
CSPG4-201ENST00000308508 FAM208BQ5VWN6 2430 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 J3QKU1 62 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 LST1O00453 97 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 Q6Q795 121 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 C9orf85Q96MD7 179 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 SMAD5-AS1Q9Y6J3 95 aa10.45□□□□□ -0.74
CSPG4-201ENST00000308508 TRBV6-5A0A0K0K1A5 114 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 A0A087WZ39 114 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 C6orf99Q4VX62 202 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 DHRS4-AS1Q9P1J3 65 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 TP53TG3Q9ULZ0 132 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 CEP192Q8TEP8 1941 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 MIFP14174 115 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 A0A096LNI7 61 aa10.44□□□□□ -0.74
CSPG4-201ENST00000308508 SMIM9A6NGZ8 99 aa10.43□□□□□ -0.74
CSPG4-201ENST00000308508 GRNP28799 593 aaKnown RBP10.43□□□□□ -0.74
CSPG4-201ENST00000308508 CRYGDP07320 174 aa10.43□□□□□ -0.74
CSPG4-201ENST00000308508 OTOGLQ3ZCN5 2332 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 M0QXV9 152 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 P0C879 139 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 Q6JHZ5 121 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 Q6ZTI0 123 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 IL17DQ8TAD2 202 aa10.42□□□□□ -0.74
CSPG4-201ENST00000308508 XGP55808 180 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms