RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 STHQ8IWL8 128 aa13.32□□□□□ -0.28
SHKBP1-201ENST00000291842 JMJD1CQ15652 2540 aa13.32□□□□□ -0.28
SHKBP1-201ENST00000291842 COTL1Q14019 142 aa13.31□□□□□ -0.28
SHKBP1-201ENST00000291842 VPS25Q9BRG1 176 aa13.31□□□□□ -0.28
SHKBP1-201ENST00000291842 FAM104AQ969W3 186 aa13.31□□□□□ -0.28
SHKBP1-201ENST00000291842 LGALS3P17931 250 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 KRTAP1-1Q07627 177 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 FHL3Q13643 280 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 RRN3P1Q2M238 152 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 SETXQ7Z333 2677 aaKnown RBP13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 A0A1B0GWB2 263 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 K7ERU9 68 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 ZNF22P17026 224 aaPredicted RBP13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 SFTA2Q6UW10 78 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 AMELXQ99217 191 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 EDA2RQ9HAV5 297 aa13.3□□□□□ -0.28
SHKBP1-201ENST00000291842 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 TMEM223A0PJW6 202 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 IGKV2-29A2NJV5 120 aaPredicted RBP13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 H3BMG7 143 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 RHODO00212 210 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 APOMO95445 188 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 LINC01006Q8NI28 216 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 PGPEP1Q9NXJ5 209 aa13.29□□□□□ -0.28
SHKBP1-201ENST00000291842 C1orf158Q8N1D5 194 aa13.28□□□□□ -0.28
SHKBP1-201ENST00000291842 MTURNQ8N3F0 131 aa13.28□□□□□ -0.28
SHKBP1-201ENST00000291842 TEX29Q8N6K0 151 aa13.28□□□□□ -0.28
SHKBP1-201ENST00000291842 HELZ2Q9BYK8 2649 aaKnown RBP13.28□□□□□ -0.28
SHKBP1-201ENST00000291842 SPXQ9BT56 116 aa13.28□□□□□ -0.28
SHKBP1-201ENST00000291842 CHCHD7Q9BUK0 85 aa13.27□□□□□ -0.29
SHKBP1-201ENST00000291842 TMEM238LA0A1B0GVL6 79 aa13.27□□□□□ -0.29
SHKBP1-201ENST00000291842 IGHV3-53P01767 116 aa13.26□□□□□ -0.29
SHKBP1-201ENST00000291842 TRGV1A0A0A0MS02 117 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 TRAV25A0A0B4J276 109 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 A6NJY4 79 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 LEPROTO15243 131 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 RPL24P83731 157 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 BEAN1Q3B7T3 259 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 PIK3CD-AS1Q5SR53 167 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 SLC25A29Q8N8R3 303 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 LINC00467Q9BRT7 94 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 WFDC10AQ9H1F0 79 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 IGHV3-30P01768 117 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 IGHV3-30-5P0DP03 117 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 UBE2D1P51668 147 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 PYGO1Q9Y3Y4 419 aa13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 TSSC4Q9Y5U2 329 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-201ENST00000291842 ADARB2-AS1A8MUL3 147 aa13.24□□□□□ -0.29
SHKBP1-201ENST00000291842 RS1O15537 224 aa13.24□□□□□ -0.29
SHKBP1-201ENST00000291842 WFDC2Q14508 124 aa13.24□□□□□ -0.29
SHKBP1-201ENST00000291842 PTH2Q96A98 100 aa13.24□□□□□ -0.29
SHKBP1-201ENST00000291842 TRAV8-3A0A0A6YYJ7 113 aa13.23□□□□□ -0.29
SHKBP1-201ENST00000291842 UBE2D4Q9Y2X8 147 aa13.23□□□□□ -0.29
SHKBP1-201ENST00000291842 TSPAN13O95857 204 aa13.22□□□□□ -0.29
SHKBP1-201ENST00000291842 SPANXB1Q9NS25 103 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-201ENST00000291842 Q6ZTI0 123 aa13.22□□□□□ -0.29
SHKBP1-201ENST00000291842 Q6ZUT4 128 aa13.22□□□□□ -0.29
SHKBP1-201ENST00000291842 ANK3Q12955 4377 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 UNC79Q9P2D8 2635 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 LOC107984156A0A0G2JMH3 177 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 TEX48A0A1B0GUV7 120 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 G3V4G9 280 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 NDUFA11Q86Y39 141 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 ARL17AQ8IVW1 177 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 CLUHP3Q96NS8 147 aa13.21□□□□□ -0.29
SHKBP1-201ENST00000291842 A8MZ25 164 aa13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 RNASE1P07998 156 aaKnown RBP13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 CFC1BP0CG36 223 aa13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 CFC1P0CG37 223 aa13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 IGHV3-30-3P0DP02 117 aa13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 PLA2G2AP14555 144 aa13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 MRPS36P82909 103 aaKnown RBP13.21□□□□□ -0.3
SHKBP1-201ENST00000291842 C10orf126Q8N4M7 172 aa13.2□□□□□ -0.3
SHKBP1-201ENST00000291842 SMR3AQ99954 134 aa13.2□□□□□ -0.3
SHKBP1-201ENST00000291842 TIMM21Q9BVV7 248 aa13.2□□□□□ -0.3
SHKBP1-201ENST00000291842 RPL35AP18077 110 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-201ENST00000291842 C2CD3Q4AC94 2353 aa13.19□□□□□ -0.3
SHKBP1-201ENST00000291842 FASNP49327 2511 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-201ENST00000291842 DNAJC30Q96LL9 226 aa13.19□□□□□ -0.3
SHKBP1-201ENST00000291842 SH2D6Q7Z4S9 175 aa13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 SPANXA1Q9NS26 97 aa13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 F8W1H4 67 aa13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 GIG44P09565 113 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 GAGE13Q4V321 117 aa13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 IL17DQ8TAD2 202 aa13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 NOP10Q9NPE3 64 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-201ENST00000291842 J3QKU1 62 aa13.17□□□□□ -0.3
SHKBP1-201ENST00000291842 SPINK8P0C7L1 97 aa13.17□□□□□ -0.3
SHKBP1-201ENST00000291842 C16orf95Q9H693 158 aa13.17□□□□□ -0.3
SHKBP1-201ENST00000291842 A4D1N5 150 aa13.16□□□□□ -0.3
SHKBP1-201ENST00000291842 PSMB2P49721 201 aa13.16□□□□□ -0.3
SHKBP1-201ENST00000291842 ETDBQ3ZM63 59 aa13.16□□□□□ -0.3
SHKBP1-201ENST00000291842 MUSTN1Q8IVN3 82 aa13.16□□□□□ -0.3
SHKBP1-201ENST00000291842 A0A0J9YXY3 114 aa13.16□□□□□ -0.3
SHKBP1-201ENST00000291842 CRYBA4P53673 196 aa13.15□□□□□ -0.3
SHKBP1-201ENST00000291842 TMEM263Q8WUH6 116 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-201ENST00000291842 LINC00694P0DN24 101 aa13.15□□□□□ -0.3
SHKBP1-201ENST00000291842 DGAT2L7PQ6IED9 249 aa13.15□□□□□ -0.3
SHKBP1-201ENST00000291842 PRO0461Q9UI25 63 aa13.15□□□□□ -0.3
SHKBP1-201ENST00000291842 TINCRA0A1B0GVN0 87 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms