RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 COTL1Q14019 142 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 EIF5AL1Q6IS14 154 aaKnown RBP8.19□□□□□ -1.1
CD44-203ENST00000278386 AKAP14Q86UN6 197 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 C9orf62Q8N4C0 152 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 GFRA4Q9GZZ7 299 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 BIN3Q9NQY0 253 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 MED9Q9NWA0 146 aa8.19□□□□□ -1.1
CD44-203ENST00000278386 IGHV3-64A0A075B6Q5 118 aa8.18□□□□□ -1.1
CD44-203ENST00000278386 CNBPP62633 177 aaKnown RBP8.18□□□□□ -1.1
CD44-203ENST00000278386 PGLYRP4Q96LB8 373 aa8.18□□□□□ -1.1
CD44-203ENST00000278386 NIT2Q9NQR4 276 aa8.18□□□□□ -1.1
CD44-203ENST00000278386 PLA2G2DQ9UNK4 145 aa8.18□□□□□ -1.1
CD44-203ENST00000278386 IGKV3OR2-268A0A0C4DH90 116 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 A0A1B0GUV1 79 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 BCL2P10415 239 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 NTF3P20783 257 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 TWIST1Q15672 202 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 SDIM1Q6ZPB5 146 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 SLC51BQ86UW2 128 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 DPH3Q96FX2 82 aa8.17□□□□□ -1.1
CD44-203ENST00000278386 TRBV20OR9-2A0A075B6H5 130 aa8.16□□□□□ -1.1
CD44-203ENST00000278386 CTRLP40313 264 aa8.16□□□□□ -1.1
CD44-203ENST00000278386 TRAV26-2A0A0B4J265 109 aa8.15□□□□□ -1.1
CD44-203ENST00000278386 CHTF8P0CG12 524 aa8.15□□□□□ -1.1
CD44-203ENST00000278386 NUDT10Q8NFP7 164 aa8.15□□□□□ -1.1
CD44-203ENST00000278386 NUDT11Q96G61 164 aa8.15□□□□□ -1.1
CD44-203ENST00000278386 GAGE12HA6NDE8 117 aa8.14□□□□□ -1.11
CD44-203ENST00000278386 CIRBPQ14011 172 aaKnown RBP8.14□□□□□ -1.11
CD44-203ENST00000278386 AMMECR1LQ6DCA0 310 aa8.14□□□□□ -1.11
CD44-203ENST00000278386 RNASE7Q9H1E1 156 aaKnown RBP8.14□□□□□ -1.11
CD44-203ENST00000278386 RPP21Q9H633 154 aaKnown RBP8.14□□□□□ -1.11
CD44-203ENST00000278386 UBR4Q5T4S7 5183 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 A0A087WYN8 130 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 APCSP02743 223 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 HIGD2BQ4VC39 106 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 RNASEKQ6P5S7 137 aaKnown RBP8.13□□□□□ -1.11
CD44-203ENST00000278386 SMIM15Q7Z3B0 74 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 C15orf56Q8N910 161 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 GATD1Q8NB37 220 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 SPACA4Q8TDM5 124 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 RNF185Q96GF1 192 aa8.13□□□□□ -1.11
CD44-203ENST00000278386 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.12□□□□□ -1.11
CD44-203ENST00000278386 IGKV2-29A2NJV5 120 aaPredicted RBP8.12□□□□□ -1.11
CD44-203ENST00000278386 SLPIP03973 132 aa8.12□□□□□ -1.11
CD44-203ENST00000278386 TAGLN2P37802 199 aaKnown RBP8.12□□□□□ -1.11
CD44-203ENST00000278386 CFAP161Q6P656 301 aa8.12□□□□□ -1.11
CD44-203ENST00000278386 RPL39LQ96EH5 51 aaKnown RBP8.12□□□□□ -1.11
CD44-203ENST00000278386 CNFNQ9BYD5 112 aa8.12□□□□□ -1.11
CD44-203ENST00000278386 K7EN84 100 aa8.11□□□□□ -1.11
CD44-203ENST00000278386 ALKAL2Q6UX46 152 aa8.11□□□□□ -1.11
CD44-203ENST00000278386 Q6ZRU5 148 aa8.11□□□□□ -1.11
CD44-203ENST00000278386 C7orf33Q8WU49 177 aa8.11□□□□□ -1.11
CD44-203ENST00000278386 IGKV2-24A0A0C4DH68 120 aa8.1□□□□□ -1.11
CD44-203ENST00000278386 NCR2O95944 276 aa8.1□□□□□ -1.11
CD44-203ENST00000278386 CHCHD10Q8WYQ3 142 aaPredicted RBP8.1□□□□□ -1.11
CD44-203ENST00000278386 SDHAF1A6NFY7 115 aa8.09□□□□□ -1.11
CD44-203ENST00000278386 PHOX2AO14813 284 aa8.09□□□□□ -1.11
CD44-203ENST00000278386 GATCO43716 136 aaKnown RBP8.09□□□□□ -1.11
CD44-203ENST00000278386 RPS10P46783 165 aaKnown RBP8.09□□□□□ -1.11
CD44-203ENST00000278386 COX6A2Q02221 97 aa8.09□□□□□ -1.11
CD44-203ENST00000278386 MAJINQ3KP22 176 aa8.09□□□□□ -1.11
CD44-203ENST00000278386 PLAC8Q9NZF1 115 aa8.09□□□□□ -1.11
CD44-203ENST00000278386 H7C423 109 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 NDUFS6O75380 124 aaKnown RBP8.08□□□□□ -1.12
CD44-203ENST00000278386 MT1HL1P0DM35 61 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 FGF6P10767 208 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 CEBPGP53567 150 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 FOXA3P55318 350 aaPredicted RBP8.08□□□□□ -1.12
CD44-203ENST00000278386 TEX261Q6UWH6 196 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 OCC1Q8TAD7 63 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 GTSF1Q8WW33 167 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 BTF3L4Q96K17 158 aa8.08□□□□□ -1.12
CD44-203ENST00000278386 GVQW2A0A096LPI5 108 aaPredicted RBP8.07□□□□□ -1.12
CD44-203ENST00000278386 ZNF25P17030 456 aaPredicted RBP8.07□□□□□ -1.12
CD44-203ENST00000278386 PMCHP20382 165 aa8.07□□□□□ -1.12
CD44-203ENST00000278386 PRSS3P2Q8NHM4 247 aa8.07□□□□□ -1.12
CD44-203ENST00000278386 BORCS7Q96B45 105 aa8.07□□□□□ -1.12
CD44-203ENST00000278386 TMEM101Q96IK0 257 aa8.07□□□□□ -1.12
CD44-203ENST00000278386 I3L3M4 83 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 XCL1P47992 114 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 STPG4Q8N801 248 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 OR5A1Q8NGJ0 315 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 LYPD6BQ8NI32 183 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 TNXBP22105 4242 aa8.06□□□□□ -1.12
CD44-203ENST00000278386 A8MWL6 223 aa8.05□□□□□ -1.12
CD44-203ENST00000278386 TMEM250H0YL14 139 aa8.05□□□□□ -1.12
CD44-203ENST00000278386 FOXI1Q12951 378 aa8.05□□□□□ -1.12
CD44-203ENST00000278386 TMEM242Q9NWH2 141 aa8.05□□□□□ -1.12
CD44-203ENST00000278386 A0A096LNI7 61 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 CCL25O15444 150 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 BLOC1S1P78537 153 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 FAM231DQ6ZW35 169 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 MRAP2Q96G30 205 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 ST20Q9HBF5 79 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 PKIGQ9Y2B9 76 aa8.04□□□□□ -1.12
CD44-203ENST00000278386 IGHV1-58A0A0C4DH39 117 aa8.03□□□□□ -1.12
CD44-203ENST00000278386 PRR3P79522 188 aaKnown RBP8.03□□□□□ -1.12
CD44-203ENST00000278386 CT83Q5H943 113 aa8.03□□□□□ -1.12
CD44-203ENST00000278386 LINC00526Q96FQ7 95 aa8.03□□□□□ -1.12
CD44-203ENST00000278386 CARD19Q96LW7 228 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms