RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.35□□□□□ -1.557e-7■■■■■ 28.6
CSDE1-201ENST00000261443 ANKHD1Q8IWZ3 2542 aaKnown RBP5.35□□□□□ -1.55
CSDE1-201ENST00000261443 A8MZ25 164 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 CD28P10747 220 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 C5orf38Q86SI9 138 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DEFB124Q8NES8 71 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 hADV29S1A0JD25 119 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 SOCS3O14543 225 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 LY6HO94772 140 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DAZ2Q13117 558 aaKnown RBP5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DAZ4Q86SG3 579 aaKnown RBP5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DAND5Q8N907 189 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 C2orf48Q96LS8 159 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DAZ1Q9NQZ3 744 aaKnown RBP5.35□□□□□ -1.55
CSDE1-201ENST00000261443 DAZ3Q9NR90 486 aaKnown RBP5.35□□□□□ -1.55
CSDE1-201ENST00000261443 PEMTQ9UBM1 199 aa5.35□□□□□ -1.55
CSDE1-201ENST00000261443 TRACP01848 142 aa5.34□□□□□ -1.55
CSDE1-201ENST00000261443 MRPS36P82909 103 aaKnown RBP5.34□□□□□ -1.55
CSDE1-201ENST00000261443 KLK9Q2XQG4 91 aa5.34□□□□□ -1.55
CSDE1-201ENST00000261443 VSIG2Q96IQ7 327 aa5.34□□□□□ -1.55
CSDE1-201ENST00000261443 KLK9Q9UKQ9 250 aa5.34□□□□□ -1.55
CSDE1-201ENST00000261443 CELSR2Q9HCU4 2923 aa5.34□□□□□ -1.55
CSDE1-201ENST00000261443 TRAV25A0A0B4J276 109 aa5.34□□□□□ -1.56
CSDE1-201ENST00000261443 ATOX1O00244 68 aa5.34□□□□□ -1.56
CSDE1-201ENST00000261443 WIPF1O43516 503 aa5.34□□□□□ -1.56
CSDE1-201ENST00000261443 RNASE13Q5GAN3 156 aaKnown RBP5.34□□□□□ -1.56
CSDE1-201ENST00000261443 MINOS1Q5TGZ0 78 aa5.34□□□□□ -1.56
CSDE1-201ENST00000261443 CITED2Q99967 270 aaPredicted RBP5.34□□□□□ -1.56
CSDE1-201ENST00000261443 UNQ9165/PRO28630Q6UXU0 137 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 SDIM1Q6ZPB5 146 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 MINOS1-NBL1R4GNA1 71 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 COX7A2LO14548 114 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 BAALC-AS2P0C853 105 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 PTPRQQ9UMZ3 2332 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.33□□□□□ -1.56
CSDE1-201ENST00000261443 KLLNB2CW77 178 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 TIRAPP58753 221 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 IGFL3Q6UXB1 125 aa5.33□□□□□ -1.56
CSDE1-201ENST00000261443 NACAE9PAV3 2078 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 TIMM17BO60830 172 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 KLRB1Q12918 225 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 UTP20O75691 2785 aaKnown RBP5.32□□□□□ -1.56
CSDE1-201ENST00000261443 ZFYVE26Q68DK2 2539 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 CYSTM1Q9H1C7 97 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 PYGO1Q9Y3Y4 419 aa5.32□□□□□ -1.56
CSDE1-201ENST00000261443 POLQO75417 2590 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 TRAV13-1A0A0B4J241 112 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 HIST1H4AP62805 103 aaKnown RBP5.31□□□□□ -1.56
CSDE1-201ENST00000261443 CIRBPQ14011 172 aaKnown RBP5.31□□□□□ -1.56
CSDE1-201ENST00000261443 KIR2DL5BQ8NHK3 375 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 CACNA1AO00555 2505 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 TLN2Q9Y4G6 2542 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 IGHV3-16A0A0C4DH30 117 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 TINCRA0A1B0GVN0 87 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 TRBV12-3P01733 135 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 INAFM2P0DMQ5 153 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 FAM104AQ969W3 186 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 DPH3Q96FX2 82 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 C9orf85Q96MD7 179 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 DOPEY2Q9Y3R5 2298 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 NDUFA4O00483 81 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 PF4V1P10720 104 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 TMEM258P61165 79 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 IGF2-ASQ6U949 168 aa5.31□□□□□ -1.56
CSDE1-201ENST00000261443 CSPG4Q6UVK1 2322 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 FAM223BA6NKX1 122 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 RPL18AQ02543 176 aaKnown RBP5.3□□□□□ -1.56
CSDE1-201ENST00000261443 FAM223AQ8IWN6 122 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 LINC00308Q8TCZ7 52 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 USP9YO00507 2555 aaPredicted RBP5.3□□□□□ -1.56
CSDE1-201ENST00000261443 A0A0U1RRA0 63 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 RS1O15537 224 aa5.3□□□□□ -1.56
CSDE1-201ENST00000261443 NDUFA1O15239 70 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 BEAN1Q3B7T3 259 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 Q8N2B8 174 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 RHPN1-AS1Q9BWJ2 59 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 TRAV12-2A0A075B6T6 113 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 LINC01560Q8TB33 94 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 ZNF625Q96I27 306 aaPredicted RBP5.29□□□□□ -1.56
CSDE1-201ENST00000261443 DSCR8Q96T75 97 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 C22orf24Q9Y442 160 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 IGHV3OR16-10A0A075B7F0 116 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 IGKV3-20P01619 116 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 C4orf26Q17RF5 130 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 SERP2Q8N6R1 65 aa5.29□□□□□ -1.56
CSDE1-201ENST00000261443 IGHV3-73A0A0B4J1V6 119 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 FAM222AQ5U5X8 452 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 CDKN2A-AS1Q9UH64 79 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 IGKV3D-7A0A0C4DH55 119 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 DNAL4O96015 105 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 IGHV3-11P01762 117 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 ZFP36P26651 326 aaKnown RBP5.28□□□□□ -1.56
CSDE1-201ENST00000261443 SAA4P35542 130 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 C5orf56Q8N8D9 126 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 Q8NA96 180 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 FAM218AQ96MZ4 157 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 Q9HAA7 133 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 ZANQ9Y493 2812 aa5.28□□□□□ -1.56
CSDE1-201ENST00000261443 MALP21145 153 aa5.27□□□□□ -1.57
CSDE1-201ENST00000261443 PRIMA1Q86XR5 153 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms