RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 BOD1L2Q8IYS8 172 aa16.19■□□□□ 0.18
CDX1-201ENST00000231656 TMEM141Q96I45 108 aa16.19■□□□□ 0.18
CDX1-201ENST00000231656 TIMM17AQ99595 171 aa16.19■□□□□ 0.18
CDX1-201ENST00000231656 TRGV1A0A0A0MS02 117 aa16.18■□□□□ 0.18
CDX1-201ENST00000231656 Q9UF83 564 aa16.18■□□□□ 0.18
CDX1-201ENST00000231656 PLAC8L1A1L4L8 177 aa16.18■□□□□ 0.18
CDX1-201ENST00000231656 PRSS29PA6NIE9 313 aa16.18■□□□□ 0.18
CDX1-201ENST00000231656 TNFRSF18Q9Y5U5 241 aa16.18■□□□□ 0.18
CDX1-201ENST00000231656 DLEU1O43261 78 aa16.17■□□□□ 0.18
CDX1-201ENST00000231656 DAZ2Q13117 558 aaKnown RBP16.17■□□□□ 0.18
CDX1-201ENST00000231656 ZC2HC1BQ5TFG8 222 aa16.17■□□□□ 0.18
CDX1-201ENST00000231656 C16orf74Q96GX8 76 aa16.17■□□□□ 0.18
CDX1-201ENST00000231656 IGKV2D-26A0A0A0MRZ7 120 aa16.16■□□□□ 0.18
CDX1-201ENST00000231656 PRB2P02812 416 aaPredicted RBP16.16■□□□□ 0.18
CDX1-201ENST00000231656 HINT1P49773 126 aaPredicted RBP16.16■□□□□ 0.18
CDX1-201ENST00000231656 Q6ZTI0 123 aa16.16■□□□□ 0.18
CDX1-201ENST00000231656 C20orf203Q8NBC4 194 aa16.16■□□□□ 0.18
CDX1-201ENST00000231656 DNAJC30Q96LL9 226 aa16.16■□□□□ 0.18
CDX1-201ENST00000231656 NMUP48645 174 aa16.15■□□□□ 0.18
CDX1-201ENST00000231656 DEFB135Q30KP9 77 aa16.15■□□□□ 0.18
CDX1-201ENST00000231656 PCP2Q8IVA1 136 aa16.15■□□□□ 0.18
CDX1-201ENST00000231656 OR4C5Q8NGB2 326 aa16.15■□□□□ 0.18
CDX1-201ENST00000231656 RRN3P1Q2M238 152 aa16.13■□□□□ 0.17
CDX1-201ENST00000231656 COL5A1-AS1Q5SY13 56 aa16.13■□□□□ 0.17
CDX1-201ENST00000231656 NOP10Q9NPE3 64 aaKnown RBP16.13■□□□□ 0.17
CDX1-201ENST00000231656 PMVKQ15126 192 aa16.13■□□□□ 0.17
CDX1-201ENST00000231656 ZNF479Q96JC4 524 aa16.13■□□□□ 0.17
CDX1-201ENST00000231656 TRAV4A0A0B4J268 109 aa16.12■□□□□ 0.17
CDX1-201ENST00000231656 MPV17L2Q567V2 206 aa16.12■□□□□ 0.17
CDX1-201ENST00000231656 CST9LQ9H4G1 147 aa16.12■□□□□ 0.17
CDX1-201ENST00000231656 X6R8D5 127 aa16.12■□□□□ 0.17
CDX1-201ENST00000231656 OVOL2Q9BRP0 275 aa16.11■□□□□ 0.17
CDX1-201ENST00000231656 IGLV4-69A0A075B6H9 119 aa16.1■□□□□ 0.17
CDX1-201ENST00000231656 K7EIL1 84 aa16.1■□□□□ 0.17
CDX1-201ENST00000231656 SIVA1O15304 175 aa16.1■□□□□ 0.17
CDX1-201ENST00000231656 BVES-AS1Q5T3Y7 98 aa16.09■□□□□ 0.17
CDX1-201ENST00000231656 RNF183Q96D59 192 aa16.09■□□□□ 0.17
CDX1-201ENST00000231656 SMIM9A6NGZ8 99 aa16.08■□□□□ 0.17
CDX1-201ENST00000231656 OR11H2Q8NH07 326 aa16.08■□□□□ 0.16
CDX1-201ENST00000231656 TTTY13Q9BZ97 58 aa16.08■□□□□ 0.16
CDX1-201ENST00000231656 OPRPNQ99935 248 aaPredicted RBP16.07■□□□□ 0.16
CDX1-201ENST00000231656 CHCHD7Q9BUK0 85 aa16.07■□□□□ 0.16
CDX1-201ENST00000231656 PYGO1Q9Y3Y4 419 aa16.06■□□□□ 0.16
CDX1-201ENST00000231656 IGLV4-3A0A075B6K6 122 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 GAGE12BA1L429 117 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 C11orf86A6NJI1 115 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 K7EQD1 137 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 GAGE7O76087 117 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 GAGE12FP0CL80 117 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 GAGE12GP0CL81 117 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 GAGE12IP0CL82 117 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 TRBV10-1A0A0K0K1A3 114 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 PAPPA-AS1Q5QFB9 102 aa16.05■□□□□ 0.16
CDX1-201ENST00000231656 PHLDA1Q8WV24 401 aaPredicted RBP16.05■□□□□ 0.16
CDX1-201ENST00000231656 IGHV3-38A0A0C4DH36 116 aa16.04■□□□□ 0.16
CDX1-201ENST00000231656 FAM104AQ969W3 186 aa16.04■□□□□ 0.16
CDX1-201ENST00000231656 TMEM97Q5BJF2 176 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 ZNRF2Q8NHG8 242 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 TRBV7-3A0A075B6L6 115 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 EMP1P54849 157 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 COTL1Q14019 142 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 DEFB121Q5J5C9 76 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 MAPKAPK5-AS1Q8N8E1 139 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 SLC25A29Q8N8R3 303 aa16.03■□□□□ 0.16
CDX1-201ENST00000231656 TRGV2A0A075B6R0 118 aa16.02■□□□□ 0.15
CDX1-201ENST00000231656 E9PLD3 99 aa16.02■□□□□ 0.15
CDX1-201ENST00000231656 CIDEAO60543 219 aa16.02■□□□□ 0.15
CDX1-201ENST00000231656 HIGD1BQ9P298 99 aa16.02■□□□□ 0.15
CDX1-201ENST00000231656 MIFP14174 115 aa16.01■□□□□ 0.15
CDX1-201ENST00000231656 TRAV8-6A0A0B4J262 113 aa16■□□□□ 0.15
CDX1-201ENST00000231656 NPSP0C0P6 89 aa16■□□□□ 0.15
CDX1-201ENST00000231656 RPL36AP83881 106 aaKnown RBP16■□□□□ 0.15
CDX1-201ENST00000231656 HSD52Q0P140 79 aa16■□□□□ 0.15
CDX1-201ENST00000231656 NFE4Q86UQ8 179 aa16■□□□□ 0.15
CDX1-201ENST00000231656 Q8NAQ8 132 aa16■□□□□ 0.15
CDX1-201ENST00000231656 RPL36ALQ969Q0 106 aaKnown RBP16■□□□□ 0.15
CDX1-201ENST00000231656 IGHV4-28A0A0C4DH34 117 aa16■□□□□ 0.15
CDX1-201ENST00000231656 SBSPONQ8IVN8 264 aa16■□□□□ 0.15
CDX1-201ENST00000231656 RETNQ9HD89 108 aa16■□□□□ 0.15
CDX1-201ENST00000231656 TRBV25-1A0A075B6N4 114 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 CRYBA4P53673 196 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 AMELXQ99217 191 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 VCX2Q9H322 139 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 SPANXA1Q9NS26 97 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 UBE2D4Q9Y2X8 147 aa15.99■□□□□ 0.15
CDX1-201ENST00000231656 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.98■□□□□ 0.15
CDX1-201ENST00000231656 IGKV2-29A2NJV5 120 aaPredicted RBP15.98■□□□□ 0.15
CDX1-201ENST00000231656 UBE2D3P61077 147 aa15.98■□□□□ 0.15
CDX1-201ENST00000231656 UBE2D2P62837 147 aa15.98■□□□□ 0.15
CDX1-201ENST00000231656 PRADC1Q9BSG0 188 aa15.98■□□□□ 0.15
CDX1-201ENST00000231656 DEFB4AO15263 64 aa15.98■□□□□ 0.15
CDX1-201ENST00000231656 CEMP1Q6PRD7 247 aaPredicted RBP15.98■□□□□ 0.15
CDX1-201ENST00000231656 LINC00612Q8N6U2 182 aa15.98■□□□□ 0.15
CDX1-201ENST00000231656 DAZ4Q86SG3 579 aaKnown RBP15.97■□□□□ 0.15
CDX1-201ENST00000231656 DAZ3Q9NR90 486 aaKnown RBP15.97■□□□□ 0.15
CDX1-201ENST00000231656 TENM3Q9P273 2699 aa15.96■□□□□ 0.15
CDX1-201ENST00000231656 TRBV6-4A0A1B0GX49 114 aa15.96■□□□□ 0.15
CDX1-201ENST00000231656 CHAC1Q9BUX1 264 aa15.96■□□□□ 0.15
CDX1-201ENST00000231656 GAGE12JA6NER3 117 aa15.95■□□□□ 0.14
CDX1-201ENST00000231656 GAGE1Q13065 139 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms