RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 EMP1P54849 157 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 CEND1Q8N111 149 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 TMEM263Q8WUH6 116 aaKnown RBP13.78□□□□□ -0.2
YBX3-201ENST00000228251 C9orf118A6NHY6 69 aa13.77□□□□□ -0.21
YBX3-201ENST00000228251 CSNK1G2-AS1Q8NCQ2 148 aa13.77□□□□□ -0.21
YBX3-201ENST00000228251 CHCHD7Q9BUK0 85 aa13.77□□□□□ -0.21
YBX3-201ENST00000228251 GCSHP23434 173 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 VAMP3Q15836 100 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 PHLDA1Q8WV24 401 aaPredicted RBP13.76□□□□□ -0.21
YBX3-201ENST00000228251 AMELXQ99217 191 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 PLAC8L1A1L4L8 177 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 CRYBA4P53673 196 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 LINC00482Q8N8I6 264 aa13.76□□□□□ -0.21
YBX3-201ENST00000228251 IGHV3OR16-12A0A075B7B8 117 aa13.75□□□□□ -0.21
YBX3-201ENST00000228251 AMMECR1LQ6DCA0 310 aa13.75□□□□□ -0.21
YBX3-201ENST00000228251 DAZ2Q13117 558 aaKnown RBP13.73□□□□□ -0.21
YBX3-201ENST00000228251 TSPEAR-AS2P59090 65 aa13.73□□□□□ -0.21
YBX3-201ENST00000228251 HERVK_113P61574 105 aa13.73□□□□□ -0.21
YBX3-201ENST00000228251 Q6ZTI0 123 aa13.73□□□□□ -0.21
YBX3-201ENST00000228251 TRGV1A0A0A0MS02 117 aa13.72□□□□□ -0.21
YBX3-201ENST00000228251 ZNF479Q96JC4 524 aa13.72□□□□□ -0.21
YBX3-201ENST00000228251 ZNF815PA8K554 130 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 INAFM1C9JVW0 142 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 ZNF22P17026 224 aaPredicted RBP13.71□□□□□ -0.21
YBX3-201ENST00000228251 OR4C5Q8NGB2 326 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 PLEKHB2Q96CS7 222 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 UBE2D4Q9Y2X8 147 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 C2CD3Q4AC94 2353 aa13.71□□□□□ -0.21
YBX3-201ENST00000228251 TRAV4A0A0B4J268 109 aa13.71□□□□□ -0.22
YBX3-201ENST00000228251 TMEM223A0PJW6 202 aa13.71□□□□□ -0.22
YBX3-201ENST00000228251 SMIM13P0DJ93 91 aa13.71□□□□□ -0.22
YBX3-201ENST00000228251 VCX2Q9H322 139 aa13.71□□□□□ -0.22
YBX3-201ENST00000228251 SPANXA1Q9NS26 97 aa13.71□□□□□ -0.22
YBX3-201ENST00000228251 NOTCH2Q04721 2471 aa13.7□□□□□ -0.22
YBX3-201ENST00000228251 A0A1B0GWB2 263 aa13.7□□□□□ -0.22
YBX3-201ENST00000228251 RPL35AP18077 110 aaKnown RBP13.7□□□□□ -0.22
YBX3-201ENST00000228251 TMEM170BQ5T4T1 132 aa13.7□□□□□ -0.22
YBX3-201ENST00000228251 C1QTNF4Q9BXJ3 329 aa13.7□□□□□ -0.22
YBX3-201ENST00000228251 FN1P02751 2386 aaKnown RBP13.7□□□□□ -0.22
YBX3-201ENST00000228251 A0A0J9YXV3 536 aa13.69□□□□□ -0.22
YBX3-201ENST00000228251 H3BUT2 72 aa13.69□□□□□ -0.22
YBX3-201ENST00000228251 MRPS36P82909 103 aaKnown RBP13.69□□□□□ -0.22
YBX3-201ENST00000228251 OR5A1Q8NGJ0 315 aa13.69□□□□□ -0.22
YBX3-201ENST00000228251 C16orf74Q96GX8 76 aa13.69□□□□□ -0.22
YBX3-201ENST00000228251 TRBV10-1A0A0K0K1A3 114 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 CEMP1Q6PRD7 247 aaPredicted RBP13.68□□□□□ -0.22
YBX3-201ENST00000228251 HIST1H4GQ99525 98 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 OVOL2Q9BRP0 275 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 HIVEP1P15822 2718 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 COTL1Q14019 142 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 RAB37Q96AX2 223 aa13.68□□□□□ -0.22
YBX3-201ENST00000228251 NOTCH3Q9UM47 2321 aa13.67□□□□□ -0.22
YBX3-201ENST00000228251 IGHV3-38A0A0C4DH36 116 aa13.67□□□□□ -0.22
YBX3-201ENST00000228251 A0A0J9YY99 117 aa13.67□□□□□ -0.22
YBX3-201ENST00000228251 K7ERJ3 54 aa13.67□□□□□ -0.22
YBX3-201ENST00000228251 NOP10Q9NPE3 64 aaKnown RBP13.67□□□□□ -0.22
YBX3-201ENST00000228251 NHP2Q9NX24 153 aaKnown RBP13.67□□□□□ -0.22
YBX3-201ENST00000228251 VWFP04275 2813 aa13.67□□□□□ -0.22
YBX3-201ENST00000228251 A0A1W2PPM0 123 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 K7EQD1 137 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 LEPROTO15243 131 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 PF4P02776 101 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 NAA38Q9BRA0 125 aaKnown RBP13.66□□□□□ -0.22
YBX3-201ENST00000228251 TIMM21Q9BVV7 248 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.66□□□□□ -0.22
YBX3-201ENST00000228251 IGKV2-29A2NJV5 120 aaPredicted RBP13.66□□□□□ -0.22
YBX3-201ENST00000228251 J3QQQ9 107 aa13.66□□□□□ -0.22
YBX3-201ENST00000228251 C12orf74Q32Q52 190 aa13.65□□□□□ -0.22
YBX3-201ENST00000228251 K7EP34 96 aa13.64□□□□□ -0.23
YBX3-201ENST00000228251 Q6ZUT4 128 aa13.64□□□□□ -0.23
YBX3-201ENST00000228251 SLC25A29Q8N8R3 303 aa13.64□□□□□ -0.23
YBX3-201ENST00000228251 SPATA3Q8NHX4 192 aa13.64□□□□□ -0.23
YBX3-201ENST00000228251 SPANXB1Q9NS25 103 aaPredicted RBP13.64□□□□□ -0.23
YBX3-201ENST00000228251 FOSL1P15407 271 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 UBE2D3P61077 147 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 UBE2D2P62837 147 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 TENM1Q9UKZ4 2725 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 RRN3P1Q2M238 152 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 SCGB1D4Q6XE38 83 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 SBSPONQ8IVN8 264 aa13.63□□□□□ -0.23
YBX3-201ENST00000228251 TINCRA0A1B0GVN0 87 aa13.62□□□□□ -0.23
YBX3-201ENST00000228251 CIDEAO60543 219 aa13.62□□□□□ -0.23
YBX3-201ENST00000228251 RPL36AP83881 106 aaKnown RBP13.62□□□□□ -0.23
YBX3-201ENST00000228251 SAMD5Q5TGI4 173 aa13.62□□□□□ -0.23
YBX3-201ENST00000228251 NTM-AS1Q6ZSK4 140 aa13.62□□□□□ -0.23
YBX3-201ENST00000228251 RPL36ALQ969Q0 106 aaKnown RBP13.62□□□□□ -0.23
YBX3-201ENST00000228251 GAGE10A6NGK3 116 aa13.61□□□□□ -0.23
YBX3-201ENST00000228251 RNASE13Q5GAN3 156 aaKnown RBP13.61□□□□□ -0.23
YBX3-201ENST00000228251 INSL3P51460 131 aa13.6□□□□□ -0.23
YBX3-201ENST00000228251 UBE2D1P51668 147 aa13.6□□□□□ -0.23
YBX3-201ENST00000228251 DAZ4Q86SG3 579 aaKnown RBP13.6□□□□□ -0.23
YBX3-201ENST00000228251 DAZ3Q9NR90 486 aaKnown RBP13.6□□□□□ -0.23
YBX3-201ENST00000228251 IGLL5B9A064 214 aa13.6□□□□□ -0.23
YBX3-201ENST00000228251 CRLF1O75462 422 aa13.6□□□□□ -0.23
YBX3-201ENST00000228251 LGALS3P17931 250 aaKnown RBP13.6□□□□□ -0.23
YBX3-201ENST00000228251 GTF2H5Q6ZYL4 71 aa13.6□□□□□ -0.23
YBX3-201ENST00000228251 GAGE12BA1L429 117 aa13.59□□□□□ -0.23
YBX3-201ENST00000228251 GAGE7O76087 117 aa13.59□□□□□ -0.23
YBX3-201ENST00000228251 GAGE12FP0CL80 117 aa13.59□□□□□ -0.23
YBX3-201ENST00000228251 GAGE12GP0CL81 117 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms