RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ZNF580Q9UK33 172 aa8.68□□□□□ -1.02
CLN6-217ENST00000636964 SMKR1H3BMG3 65 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 DEFB136Q30KP8 78 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 U3KQK5 164 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 SYNJ2BPP57105 145 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 AMN1Q8IY45 258 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 SMR3AQ99954 134 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 IGHV4OR15-8A0A075B7B6 117 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 A0A087WW49 117 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 GAS8-AS1O95177 125 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 MALP21145 153 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 Q6ZQT7 251 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 C10orf126Q8N4M7 172 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 IFI27L1Q96BM0 104 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 LINC01587Q99440 93 aa8.67□□□□□ -1.02
CLN6-217ENST00000636964 TRBV25-1A0A075B6N4 114 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 F6UB75 175 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 KHDC1LQ5JSQ8 128 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 RASL10AQ92737 203 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 FOXC2Q99958 501 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 ESM1Q9NQ30 184 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 AKAP9Q99996 3911 aa8.66□□□□□ -1.02
CLN6-217ENST00000636964 A0A1B0GX51 115 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 TMEM89A2RUT3 159 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 DNAJC9-AS1A6NH13 148 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 ELANEP08246 267 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 ZNF493Q6ZR52 646 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 IL17DQ8TAD2 202 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 ZMAT4Q9H898 229 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 HERVK_113P63121 156 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 CEND1Q8N111 149 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 MAPKAPK5-AS1Q8N8E1 139 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 C11orf44Q8N8P7 122 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 RETNQ9HD89 108 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 HIGD1BQ9P298 99 aa8.65□□□□□ -1.02
CLN6-217ENST00000636964 NPYP01303 97 aa8.65□□□□□ -1.03
CLN6-217ENST00000636964 HBDP02042 147 aa8.65□□□□□ -1.03
CLN6-217ENST00000636964 LGALS1P09382 135 aaKnown RBP8.65□□□□□ -1.03
CLN6-217ENST00000636964 SMCPP49901 116 aaPredicted RBP8.65□□□□□ -1.03
CLN6-217ENST00000636964 LYZL1Q6UWQ5 148 aa8.65□□□□□ -1.03
CLN6-217ENST00000636964 MRPL51Q4U2R6 128 aaKnown RBP8.64□□□□□ -1.03
CLN6-217ENST00000636964 C9orf153Q5TBE3 101 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 TMEM262E9PQX1 116 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 SOCS3O14543 225 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 HOXD3P31249 432 aaPredicted RBP8.64□□□□□ -1.03
CLN6-217ENST00000636964 Q6ZSV7 163 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 NFE4Q86UQ8 179 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 ZNRF2Q8NHG8 242 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 UBE2E2Q96LR5 201 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 RBAKDNA6NC62 111 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 RIGQ13278 110 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 ZNF575Q86XF7 245 aa8.64□□□□□ -1.03
CLN6-217ENST00000636964 TRAV4A0A0B4J268 109 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 SLURP1P55000 103 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 C6orf226Q5I0X4 101 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 FAM104BQ5XKR9 115 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 GTSCR1Q86UQ5 136 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 FAM236AA0A1B0GUQ0 79 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 FAM236BA0A1B0GV22 79 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 K7EMT4 169 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 Q8N2B8 174 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 MYOZ3Q8TDC0 251 aa8.63□□□□□ -1.03
CLN6-217ENST00000636964 FAM236DA0A1B0GTK5 79 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 FAM236CP0DP71 79 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 C9orf47Q6ZRZ4 202 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 COX8CQ7Z4L0 72 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 MRPL53Q96EL3 112 aaKnown RBP8.62□□□□□ -1.03
CLN6-217ENST00000636964 MDFICQ9P1T7 246 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 C11orf21Q9P2W6 132 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 NDUFA7O95182 113 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 C12orf74Q32Q52 190 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 PRR9Q5T870 116 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 OR10J6PQ8NGY7 276 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 PF4P02776 101 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 C1orf195Q5TG92 126 aa8.62□□□□□ -1.03
CLN6-217ENST00000636964 KLK5Q9Y337 293 aaPredicted RBP8.62□□□□□ -1.03
CLN6-217ENST00000636964 RPS28P62857 69 aaKnown RBP8.61□□□□□ -1.03
CLN6-217ENST00000636964 TEP1Q99973 2627 aaKnown RBP8.61□□□□□ -1.03
CLN6-217ENST00000636964 C4orf48Q5BLP8 95 aa8.61□□□□□ -1.03
CLN6-217ENST00000636964 IGKV3D-20A0A0C4DH25 116 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 ZNF688P0C7X2 276 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 ORMDL3Q8N138 153 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 ATP6V0E2Q8NHE4 81 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 MSRB1Q9NZV6 116 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 MORN3Q6PF18 240 aaPredicted RBP8.6□□□□□ -1.03
CLN6-217ENST00000636964 TRPT1Q86TN4 253 aaKnown RBP8.6□□□□□ -1.03
CLN6-217ENST00000636964 DCANP1Q8TF63 244 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 LYRM7Q5U5X0 104 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 TMEM86BQ8N661 226 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 KLHL30-AS1Q8NEE0 82 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 CHCHD5Q9BSY4 110 aa8.6□□□□□ -1.03
CLN6-217ENST00000636964 CRYGDP07320 174 aa8.59□□□□□ -1.03
CLN6-217ENST00000636964 TWIST1Q15672 202 aa8.59□□□□□ -1.03
CLN6-217ENST00000636964 OVOL1O14753 267 aa8.59□□□□□ -1.03
CLN6-217ENST00000636964 PPDPFLQ8WWR9 84 aa8.59□□□□□ -1.03
CLN6-217ENST00000636964 SPRY2O43597 315 aa8.59□□□□□ -1.04
CLN6-217ENST00000636964 IGKV3-20P01619 116 aa8.59□□□□□ -1.04
CLN6-217ENST00000636964 RRN3P1Q2M238 152 aa8.59□□□□□ -1.04
CLN6-217ENST00000636964 PSMG4Q5JS54 123 aa8.59□□□□□ -1.04
CLN6-217ENST00000636964 ZC2HC1BQ5TFG8 222 aa8.59□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms