RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TNP2Q05952 138 aa12.21□□□□□ -0.45
CLN3-247ENST00000636351 F8W036 122 aa12.2□□□□□ -0.46
CLN3-247ENST00000636351 FOXA3P55318 350 aaPredicted RBP12.2□□□□□ -0.46
CLN3-247ENST00000636351 NAT8BQ9UHF3 227 aa12.2□□□□□ -0.46
CLN3-247ENST00000636351 TMEM218A2RU14 115 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 LINC00862A6NCI5 91 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 C16orf90A8MZG2 172 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 H7C1H1 209 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 PPP1R2P9O14990 202 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 LINC00694P0DN24 101 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 LINC00315P59091 139 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 OR10J3Q5JRS4 329 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 SUMO4Q6EEV6 95 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 NUP35Q8NFH5 326 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 GTSF1LQ9H1H1 148 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 LRP1BQ9NZR2 4599 aa12.19□□□□□ -0.46
CLN3-247ENST00000636351 TRBV7-3A0A075B6L6 115 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 NBDYA0A0U1RRE5 68 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 SIVA1O15304 175 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 TIRAPP58753 221 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 RIGQ13278 110 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 TTC32Q5I0X7 151 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 NEXN-AS1Q8NBZ9 246 aa12.18□□□□□ -0.46
CLN3-247ENST00000636351 TRAV8-6A0A0B4J262 113 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 SMIM27A0A1W2PRY6 76 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 MT-ND4LP03901 98 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 ADCYAP1P18509 176 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 WFDC10BQ8IUB3 73 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 C6orf223Q8N319 242 aa12.17□□□□□ -0.46
CLN3-247ENST00000636351 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.17□□□□□ -0.46
CLN3-247ENST00000636351 LELP1Q5T871 98 aa12.16□□□□□ -0.46
CLN3-247ENST00000636351 TNFRSF18Q9Y5U5 241 aa12.16□□□□□ -0.46
CLN3-247ENST00000636351 M0QY20 66 aa12.15□□□□□ -0.46
CLN3-247ENST00000636351 CDK2AP2O75956 126 aa12.15□□□□□ -0.46
CLN3-247ENST00000636351 UBE2D3P61077 147 aa12.15□□□□□ -0.46
CLN3-247ENST00000636351 UBE2D2P62837 147 aa12.15□□□□□ -0.46
CLN3-247ENST00000636351 MAPKAPK5-AS1Q8N8E1 139 aa12.15□□□□□ -0.46
CLN3-247ENST00000636351 A0A087WWC5 75 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 TRAV26-2A0A0B4J265 109 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 IGHV3-38A0A0C4DH36 116 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 RASL11AQ6T310 242 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 ANAPC16Q96DE5 110 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 SEC11CQ9BY50 192 aa12.14□□□□□ -0.47
CLN3-247ENST00000636351 CAMPP49913 170 aa12.12□□□□□ -0.47
CLN3-247ENST00000636351 MRPL54Q6P161 138 aaKnown RBP12.12□□□□□ -0.47
CLN3-247ENST00000636351 DNAJC30Q96LL9 226 aa12.12□□□□□ -0.47
CLN3-247ENST00000636351 TMEM191AQ9H0A3 160 aa12.12□□□□□ -0.47
CLN3-247ENST00000636351 TRAV9-2A0A087WT02 112 aa12.11□□□□□ -0.47
CLN3-247ENST00000636351 DAZ4Q86SG3 579 aaKnown RBP12.11□□□□□ -0.47
CLN3-247ENST00000636351 GATD1Q8NB37 220 aa12.11□□□□□ -0.47
CLN3-247ENST00000636351 KRTAP1-5Q9BYS1 174 aa12.11□□□□□ -0.47
CLN3-247ENST00000636351 NIT2Q9NQR4 276 aa12.11□□□□□ -0.47
CLN3-247ENST00000636351 DAZ3Q9NR90 486 aaKnown RBP12.11□□□□□ -0.47
CLN3-247ENST00000636351 DNAH5Q8TE73 4624 aa12.1□□□□□ -0.47
CLN3-247ENST00000636351 A0A1B0GW15 77 aa12.1□□□□□ -0.47
CLN3-247ENST00000636351 DNAH10OSP0CZ25 163 aa12.1□□□□□ -0.47
CLN3-247ENST00000636351 HBBP68871 147 aa12.1□□□□□ -0.47
CLN3-247ENST00000636351 AMN1Q8IY45 258 aa12.1□□□□□ -0.47
CLN3-247ENST00000636351 APOBP04114 4563 aaKnown RBP12.1□□□□□ -0.47
CLN3-247ENST00000636351 IGHV3-30P01768 117 aa12.09□□□□□ -0.47
CLN3-247ENST00000636351 IGHV3-33P01772 117 aa12.09□□□□□ -0.47
CLN3-247ENST00000636351 S100A8P05109 93 aa12.09□□□□□ -0.47
CLN3-247ENST00000636351 IGHV3-30-3P0DP02 117 aa12.09□□□□□ -0.47
CLN3-247ENST00000636351 IGHV3-30-5P0DP03 117 aa12.09□□□□□ -0.47
CLN3-247ENST00000636351 RPL39LQ96EH5 51 aaKnown RBP12.09□□□□□ -0.47
CLN3-247ENST00000636351 LINC01556Q5JQF7 62 aa12.08□□□□□ -0.48
CLN3-247ENST00000636351 URGCP-MRPS24S4R325 110 aa12.08□□□□□ -0.48
CLN3-247ENST00000636351 TRBV6-8A0A0A6YYG3 113 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 TMEM97Q5BJF2 176 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 KCNIP4Q6PIL6 250 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 SPATA12Q7Z6I5 190 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 C10orf126Q8N4M7 172 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 FRZBQ92765 325 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 MRAP2Q96G30 205 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 RNF185Q96GF1 192 aa12.07□□□□□ -0.48
CLN3-247ENST00000636351 RAB4AP20338 218 aa12.06□□□□□ -0.48
CLN3-247ENST00000636351 ATP5L2Q7Z4Y8 100 aa12.06□□□□□ -0.48
CLN3-247ENST00000636351 CTDSP1Q9GZU7 261 aa12.06□□□□□ -0.48
CLN3-247ENST00000636351 CARHSP1Q9Y2V2 147 aaKnown RBP12.06□□□□□ -0.48
CLN3-247ENST00000636351 TRBV25-1A0A075B6N4 114 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 A0A1B0GXF2 115 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 NCR2O95944 276 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 NDUFA5Q16718 116 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 Q8N1X5 172 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 CHCHD5Q9BSY4 110 aa12.05□□□□□ -0.48
CLN3-247ENST00000636351 A0A087WX48 190 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 IGHV1-24A0A0C4DH33 117 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 TMEM262E9PQX1 116 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 SMKR1H3BMG3 65 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 K7EP13 123 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 COTL1Q14019 142 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 C10orf91Q5T1B1 145 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 FAM104BQ5XKR9 115 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 Q8N3U1 123 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 DEFB104AQ8WTQ1 72 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 BTF3L4Q96K17 158 aa12.04□□□□□ -0.48
CLN3-247ENST00000636351 NIT1Q86X76 327 aa12.03□□□□□ -0.48
CLN3-247ENST00000636351 ST20Q9HBF5 79 aa12.03□□□□□ -0.48
CLN3-247ENST00000636351 SDHAF1A6NFY7 115 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 GAS8-AS1O95177 125 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms