RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 TNFRSF6BO95407 300 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 FXYD7P58549 80 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 KPRPQ5T749 579 aaPredicted RBP10.33□□□□□ -0.76
CLN3-242ENST00000635958 UFSP1Q6NVU6 142 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 IGKV3D-20A0A0C4DH25 116 aa10.32□□□□□ -0.76
CLN3-242ENST00000635958 K7EMI3 77 aa10.32□□□□□ -0.76
CLN3-242ENST00000635958 K7EP34 96 aa10.32□□□□□ -0.76
CLN3-242ENST00000635958 TAL2Q16559 108 aa10.32□□□□□ -0.76
CLN3-242ENST00000635958 RPL35AP18077 110 aaKnown RBP10.31□□□□□ -0.76
CLN3-242ENST00000635958 A8MZ25 164 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 DPM2O94777 84 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 IGKCP01834 107 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 SMIM13P0DJ93 91 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 RBMY1A1P0DJD3 496 aaKnown RBP10.3□□□□□ -0.76
CLN3-242ENST00000635958 RBMY1CP0DJD4 496 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 RBMY1FQ15415 496 aaKnown RBP10.3□□□□□ -0.76
CLN3-242ENST00000635958 VPS25Q9BRG1 176 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 C1QTNF4Q9BXJ3 329 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 CSTL1Q9H114 145 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 XCL2Q9UBD3 114 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 DNAH3Q8TD57 4116 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 ODF1Q14990 250 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 KIR2DL5BQ8NHK3 375 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 MRAP2Q96G30 205 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 LINC00467Q9BRT7 94 aa10.3□□□□□ -0.76
CLN3-242ENST00000635958 INSP01308 110 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 PRSS1P07477 247 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 SMIM17P0DL12 118 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 IGHV4-30-4P0DP06 118 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 ANXA2RQ3ZCQ2 193 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 CSNK1G2-AS1Q8NCQ2 148 aa10.29□□□□□ -0.76
CLN3-242ENST00000635958 SNAI2O43623 268 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 NMUP48645 174 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 RNF151Q2KHN1 245 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 FAM159AQ6UWV7 190 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 C1orf158Q8N1D5 194 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 TP73-AS1Q9UF72 201 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 IGHV1OR15-1A0A075B7D0 117 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 A0A1W2PPM0 123 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 LINC01549A6NIU2 74 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 FABP2P12104 132 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 LAGE3Q14657 143 aa10.28□□□□□ -0.76
CLN3-242ENST00000635958 IGLV2-18A0A075B6J9 118 aa10.27□□□□□ -0.77
CLN3-242ENST00000635958 SMKR1H3BMG3 65 aa10.27□□□□□ -0.77
CLN3-242ENST00000635958 HHLA3Q9XRX5 114 aa10.27□□□□□ -0.77
CLN3-242ENST00000635958 TRAV12-1A0A0B4J245 112 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 H3BUT2 72 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 PPP1R17O96001 155 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 MED14OSP0DP75 135 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 PLNP26678 52 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 APOC4P55056 127 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 TM2D2Q9BX73 214 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 DKK2Q9UBU2 259 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 GNRH2O43555 120 aa10.26□□□□□ -0.77
CLN3-242ENST00000635958 ORMDL2Q53FV1 153 aa10.25□□□□□ -0.77
CLN3-242ENST00000635958 LINC01587Q99440 93 aa10.25□□□□□ -0.77
CLN3-242ENST00000635958 C20orf78Q9BR46 151 aa10.25□□□□□ -0.77
CLN3-242ENST00000635958 A0A087WX48 190 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 NEGR1Q7Z3B1 354 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 PCP2Q8IVA1 136 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 MSRB1Q9NZV6 116 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 SPCS1Q9Y6A9 102 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 MEGF8Q7Z7M0 2845 aa10.24□□□□□ -0.77
CLN3-242ENST00000635958 IGHV3-16A0A0C4DH30 117 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 RNASE3P12724 160 aaKnown RBP10.23□□□□□ -0.77
CLN3-242ENST00000635958 ASIPP42127 132 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 ERASQ7Z444 233 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 CHAC1Q9BUX1 264 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 TRGV11A0A075B6L2 103 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 M0R381 172 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 C21orf62-AS1Q17RA5 79 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 SPANXN1Q5VSR9 72 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 NRACQ8N912 160 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 C18orf15Q96N68 181 aa10.23□□□□□ -0.77
CLN3-242ENST00000635958 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.22□□□□□ -0.77
CLN3-242ENST00000635958 H7C1H1 209 aa10.22□□□□□ -0.77
CLN3-242ENST00000635958 CEND1Q8N111 149 aa10.22□□□□□ -0.77
CLN3-242ENST00000635958 S100A4P26447 101 aaKnown RBP10.21□□□□□ -0.77
CLN3-242ENST00000635958 ZC2HC1BQ5TFG8 222 aa10.21□□□□□ -0.77
CLN3-242ENST00000635958 C9orf85Q96MD7 179 aa10.21□□□□□ -0.77
CLN3-242ENST00000635958 MDFICQ9P1T7 246 aa10.21□□□□□ -0.77
CLN3-242ENST00000635958 NBEAL2Q6ZNJ1 2754 aa10.21□□□□□ -0.77
CLN3-242ENST00000635958 TRBV25-1A0A075B6N4 114 aa10.21□□□□□ -0.78
CLN3-242ENST00000635958 H3BVH4 76 aa10.21□□□□□ -0.78
CLN3-242ENST00000635958 GCSHP23434 173 aa10.21□□□□□ -0.78
CLN3-242ENST00000635958 K7EIL1 84 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 PRM2P04554 102 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 HTN1P15515 57 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 AZU1P20160 251 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 C11orf72Q8NBR9 251 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 SMIM2Q9BVW6 85 aa10.2□□□□□ -0.78
CLN3-242ENST00000635958 IGHV3OR16-12A0A075B7B8 117 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 F8VRH5 84 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 DPH3P1Q9H4G8 78 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 MUC4Q99102 2169 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 SMIM9A6NGZ8 99 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 F8W1H4 67 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 RPL32P62910 135 aaKnown RBP10.19□□□□□ -0.78
CLN3-242ENST00000635958 TMEM263Q8WUH6 116 aaKnown RBP10.19□□□□□ -0.78
CLN3-242ENST00000635958 RAB37Q96AX2 223 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms