RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 WFDC10BQ8IUB3 73 aa13.88□□□□□ -0.19
PTCD3-220ENST00000627371 TTC32Q5I0X7 151 aa13.87□□□□□ -0.19
PTCD3-220ENST00000627371 RIGQ13278 110 aa13.86□□□□□ -0.19
PTCD3-220ENST00000627371 ANAPC16Q96DE5 110 aa13.86□□□□□ -0.19
PTCD3-220ENST00000627371 SEC11CQ9BY50 192 aa13.86□□□□□ -0.19
PTCD3-220ENST00000627371 TRAV8-6A0A0B4J262 113 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 MT-ND4LP03901 98 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 OR10J3Q5JRS4 329 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 RASL11AQ6T310 242 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 DNAJC30Q96LL9 226 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 KRTAP1-5Q9BYS1 174 aa13.85□□□□□ -0.19
PTCD3-220ENST00000627371 A0A087WWC5 75 aa13.84□□□□□ -0.19
PTCD3-220ENST00000627371 TMEM191AQ9H0A3 160 aa13.84□□□□□ -0.19
PTCD3-220ENST00000627371 DNAH10OSP0CZ25 163 aa13.83□□□□□ -0.2
PTCD3-220ENST00000627371 TNFRSF18Q9Y5U5 241 aa13.83□□□□□ -0.2
PTCD3-220ENST00000627371 IGHV3-38A0A0C4DH36 116 aa13.82□□□□□ -0.2
PTCD3-220ENST00000627371 DAZ4Q86SG3 579 aaKnown RBP13.82□□□□□ -0.2
PTCD3-220ENST00000627371 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.82□□□□□ -0.2
PTCD3-220ENST00000627371 GATD1Q8NB37 220 aa13.82□□□□□ -0.2
PTCD3-220ENST00000627371 NIT2Q9NQR4 276 aa13.82□□□□□ -0.2
PTCD3-220ENST00000627371 DAZ3Q9NR90 486 aaKnown RBP13.82□□□□□ -0.2
PTCD3-220ENST00000627371 TRAV26-2A0A0B4J265 109 aa13.81□□□□□ -0.2
PTCD3-220ENST00000627371 C1orf134Q5TEV5 83 aa13.81□□□□□ -0.2
PTCD3-220ENST00000627371 FRZBQ92765 325 aa13.81□□□□□ -0.2
PTCD3-220ENST00000627371 DNAH17Q9UFH2 4485 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 A0A1B0GW15 77 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 K7EP13 123 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 LINC01556Q5JQF7 62 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 C10orf91Q5T1B1 145 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 FAT2Q9NYQ8 4349 aa13.8□□□□□ -0.2
PTCD3-220ENST00000627371 TRAV9-2A0A087WT02 112 aa13.79□□□□□ -0.2
PTCD3-220ENST00000627371 C6orf223Q8N319 242 aa13.79□□□□□ -0.2
PTCD3-220ENST00000627371 RNF185Q96GF1 192 aa13.79□□□□□ -0.2
PTCD3-220ENST00000627371 RTL8CO15255 209 aa13.78□□□□□ -0.2
PTCD3-220ENST00000627371 BTF3P20290 206 aaKnown RBP13.78□□□□□ -0.2
PTCD3-220ENST00000627371 RAB4AP20338 218 aa13.78□□□□□ -0.2
PTCD3-220ENST00000627371 TMEM97Q5BJF2 176 aa13.78□□□□□ -0.2
PTCD3-220ENST00000627371 AMN1Q8IY45 258 aa13.78□□□□□ -0.2
PTCD3-220ENST00000627371 CARHSP1Q9Y2V2 147 aaKnown RBP13.78□□□□□ -0.2
PTCD3-220ENST00000627371 TRBV6-8A0A0A6YYG3 113 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 A0A1B0GXF2 115 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 S100A8P05109 93 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 CAMPP49913 170 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 HBBP68871 147 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 MRPL54Q6P161 138 aaKnown RBP13.77□□□□□ -0.21
PTCD3-220ENST00000627371 ATP5L2Q7Z4Y8 100 aa13.77□□□□□ -0.21
PTCD3-220ENST00000627371 RPL39LQ96EH5 51 aaKnown RBP13.77□□□□□ -0.21
PTCD3-220ENST00000627371 LINC00336Q6ZUF6 198 aa13.76□□□□□ -0.21
PTCD3-220ENST00000627371 C10orf126Q8N4M7 172 aa13.76□□□□□ -0.21
PTCD3-220ENST00000627371 MRAP2Q96G30 205 aa13.76□□□□□ -0.21
PTCD3-220ENST00000627371 CTDSP1Q9GZU7 261 aa13.75□□□□□ -0.21
PTCD3-220ENST00000627371 FAM104BQ5XKR9 115 aa13.74□□□□□ -0.21
PTCD3-220ENST00000627371 NTM-AS1Q6ZSK4 140 aa13.74□□□□□ -0.21
PTCD3-220ENST00000627371 NIT1Q86X76 327 aa13.74□□□□□ -0.21
PTCD3-220ENST00000627371 IMMP2LQ96T52 175 aa13.74□□□□□ -0.21
PTCD3-220ENST00000627371 GAS8-AS1O95177 125 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 IGHV3-30P01768 117 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 IGHV3-33P01772 117 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 IGHV3-30-3P0DP02 117 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 IGHV3-30-5P0DP03 117 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 KCNIP4Q6PIL6 250 aa13.73□□□□□ -0.21
PTCD3-220ENST00000627371 TRBV6-5A0A0K0K1A5 114 aa13.72□□□□□ -0.21
PTCD3-220ENST00000627371 Q8N3U1 123 aa13.72□□□□□ -0.21
PTCD3-220ENST00000627371 TRBV25-1A0A075B6N4 114 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 RPS10P46783 165 aaKnown RBP13.71□□□□□ -0.21
PTCD3-220ENST00000627371 IQCJQ1A5X6 159 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 MRPL51Q4U2R6 128 aaKnown RBP13.71□□□□□ -0.21
PTCD3-220ENST00000627371 CLRN3Q8NCR9 226 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 BTF3L4Q96K17 158 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 CHCHD7Q9BUK0 85 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 URGCP-MRPS24S4R325 110 aa13.71□□□□□ -0.21
PTCD3-220ENST00000627371 EPPK1P58107 5090 aaKnown RBP13.7□□□□□ -0.22
PTCD3-220ENST00000627371 IGHV1-24A0A0C4DH33 117 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 C7orf77A4D0Y5 90 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 SDHAF1A6NFY7 115 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 PRSS29PA6NIE9 313 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 IBA57-AS1B1ANH7 110 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 NCR2O95944 276 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 RHEBQ15382 184 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 TMEM242Q9NWH2 141 aa13.7□□□□□ -0.22
PTCD3-220ENST00000627371 SMKR1H3BMG3 65 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 PPP1R17O96001 155 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 PKIAP61925 76 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 COTL1Q14019 142 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 NFE4Q86UQ8 179 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 CHCHD5Q9BSY4 110 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 ST20Q9HBF5 79 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 HECTD4Q9Y4D8 3996 aa13.69□□□□□ -0.22
PTCD3-220ENST00000627371 A0A087WX48 190 aa13.68□□□□□ -0.22
PTCD3-220ENST00000627371 LAGE3Q14657 143 aa13.68□□□□□ -0.22
PTCD3-220ENST00000627371 NDUFA5Q16718 116 aa13.68□□□□□ -0.22
PTCD3-220ENST00000627371 Q6ZRN7 208 aaPredicted RBP13.68□□□□□ -0.22
PTCD3-220ENST00000627371 NRACQ8N912 160 aa13.68□□□□□ -0.22
PTCD3-220ENST00000627371 TRAV9-1A0A075B6T8 112 aa13.67□□□□□ -0.22
PTCD3-220ENST00000627371 TMEM262E9PQX1 116 aa13.67□□□□□ -0.22
PTCD3-220ENST00000627371 TMEM70Q9BUB7 260 aa13.67□□□□□ -0.22
PTCD3-220ENST00000627371 I3L3M4 83 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 APOC3P02656 99 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 CKS2P33552 79 aa13.66□□□□□ -0.22
PTCD3-220ENST00000627371 MPV17L2Q567V2 206 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms