RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 F5H697 171 aa15.3■□□□□ 0.04
CPSF1-214ENST00000622776 SNAI2O43623 268 aa15.3■□□□□ 0.04
CPSF1-214ENST00000622776 PAGE4O60829 102 aa15.3■□□□□ 0.04
CPSF1-214ENST00000622776 TMEM97Q5BJF2 176 aa15.3■□□□□ 0.04
CPSF1-214ENST00000622776 SSBP4Q9BWG4 385 aaPredicted RBP15.3■□□□□ 0.04
CPSF1-214ENST00000622776 CYTL1Q9NRR1 136 aa15.3■□□□□ 0.04
CPSF1-214ENST00000622776 MUC21A0A0G2JKD1 596 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 MUC21A0A140T8X8 626 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 S100A9P06702 114 aaKnown RBP15.29■□□□□ 0.04
CPSF1-214ENST00000622776 RBX1P62877 108 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 SPANXN1Q5VSR9 72 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 KRTAP26-1Q6PEX3 210 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 VAX2Q9UIW0 290 aa15.29■□□□□ 0.04
CPSF1-214ENST00000622776 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.29■□□□□ 0.04
CPSF1-214ENST00000622776 OR5AL1P0C617 328 aa15.28■□□□□ 0.04
CPSF1-214ENST00000622776 CLPSL2Q6UWE3 100 aa15.28■□□□□ 0.04
CPSF1-214ENST00000622776 MLST8Q9BVC4 326 aa15.28■□□□□ 0.04
CPSF1-214ENST00000622776 G3V3Q6 166 aa15.27■□□□□ 0.04
CPSF1-214ENST00000622776 GAGE6Q13070 117 aa15.27■□□□□ 0.04
CPSF1-214ENST00000622776 LINC00269Q8N2A0 174 aa15.27■□□□□ 0.04
CPSF1-214ENST00000622776 DERL1Q9BUN8 251 aa15.27■□□□□ 0.04
CPSF1-214ENST00000622776 PANO1I0J062 215 aa15.26■□□□□ 0.03
CPSF1-214ENST00000622776 ARPC5O15511 151 aa15.26■□□□□ 0.03
CPSF1-214ENST00000622776 SSTP61278 116 aa15.26■□□□□ 0.03
CPSF1-214ENST00000622776 SDIM1Q6ZPB5 146 aa15.26■□□□□ 0.03
CPSF1-214ENST00000622776 BAGE2Q86Y30 109 aa15.26■□□□□ 0.03
CPSF1-214ENST00000622776 SCO2A0A1W2PP80 73 aa15.25■□□□□ 0.03
CPSF1-214ENST00000622776 KIF25-AS1Q9Y6Z4 181 aa15.25■□□□□ 0.03
CPSF1-214ENST00000622776 TRBV25-1A0A075B6N4 114 aa15.24■□□□□ 0.03
CPSF1-214ENST00000622776 SFT2D1Q8WV19 159 aa15.24■□□□□ 0.03
CPSF1-214ENST00000622776 SMIM17P0DL12 118 aa15.23■□□□□ 0.03
CPSF1-214ENST00000622776 CLRN3Q8NCR9 226 aa15.23■□□□□ 0.03
CPSF1-214ENST00000622776 MBD3L1Q8WWY6 194 aa15.23■□□□□ 0.03
CPSF1-214ENST00000622776 A0A1B0GV50 99 aa15.22■□□□□ 0.03
CPSF1-214ENST00000622776 IQCJQ1A5X6 159 aa15.22■□□□□ 0.03
CPSF1-214ENST00000622776 AP1S3Q96PC3 154 aa15.22■□□□□ 0.03
CPSF1-214ENST00000622776 PFDN1O60925 122 aa15.21■□□□□ 0.03
CPSF1-214ENST00000622776 FAM213BQ8TBF2 198 aa15.21■□□□□ 0.03
CPSF1-214ENST00000622776 IGHV1-24A0A0C4DH33 117 aa15.2■□□□□ 0.02
CPSF1-214ENST00000622776 REG3AQ06141 175 aa15.2■□□□□ 0.02
CPSF1-214ENST00000622776 IGLV10-54A0A075B6I4 117 aa15.19■□□□□ 0.02
CPSF1-214ENST00000622776 A0A0D9SG52 128 aa15.19■□□□□ 0.02
CPSF1-214ENST00000622776 MT1HL1P0DM35 61 aa15.19■□□□□ 0.02
CPSF1-214ENST00000622776 CNBPP62633 177 aaKnown RBP15.19■□□□□ 0.02
CPSF1-214ENST00000622776 TMUB2Q71RG4 321 aa15.19■□□□□ 0.02
CPSF1-214ENST00000622776 M0QY20 66 aa15.18■□□□□ 0.02
CPSF1-214ENST00000622776 CIRBPQ14011 172 aaKnown RBP15.18■□□□□ 0.02
CPSF1-214ENST00000622776 hDV102S1A0JD36 115 aa15.17■□□□□ 0.02
CPSF1-214ENST00000622776 UMAD1C9J7I0 102 aa15.17■□□□□ 0.02
CPSF1-214ENST00000622776 Q6ZRU5 148 aa15.17■□□□□ 0.02
CPSF1-214ENST00000622776 C20orf203Q8NBC4 194 aa15.17■□□□□ 0.02
CPSF1-214ENST00000622776 BATF3Q9NR55 127 aa15.17■□□□□ 0.02
CPSF1-214ENST00000622776 TRAV8-4A0A0B4J246 113 aa15.16■□□□□ 0.02
CPSF1-214ENST00000622776 P01737 135 aa15.16■□□□□ 0.02
CPSF1-214ENST00000622776 MGPP08493 103 aa15.16■□□□□ 0.02
CPSF1-214ENST00000622776 H7C1H1 209 aa15.15■□□□□ 0.02
CPSF1-214ENST00000622776 KCNRGQ8N5I3 272 aa15.15■□□□□ 0.02
CPSF1-214ENST00000622776 SMLR1H3BR10 107 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 GZMBP10144 247 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 RPL35P42766 123 aaKnown RBP15.14■□□□□ 0.01
CPSF1-214ENST00000622776 SUMO4Q6EEV6 95 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 DPH3Q96FX2 82 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 TPPP3Q9BW30 176 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 AP5S1Q9NUS5 200 aa15.14■□□□□ 0.01
CPSF1-214ENST00000622776 IGLV4-60A0A075B6I1 120 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 IGHV3-64A0A075B6Q5 118 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 A0A1B0GUV1 79 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 IGLC6P0CF74 106 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 TMEM243Q9BU79 118 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 GFRA4Q9GZZ7 299 aa15.13■□□□□ 0.01
CPSF1-214ENST00000622776 SLPIP03973 132 aa15.12■□□□□ 0.01
CPSF1-214ENST00000622776 H2AFB1P0C5Y9 115 aa15.12■□□□□ 0.01
CPSF1-214ENST00000622776 NKX2-5P52952 324 aaPredicted RBP15.12■□□□□ 0.01
CPSF1-214ENST00000622776 FER1L6-AS1Q8NA97 138 aa15.12■□□□□ 0.01
CPSF1-214ENST00000622776 RNF185Q96GF1 192 aa15.12■□□□□ 0.01
CPSF1-214ENST00000622776 A0A087WYN8 130 aa15.11■□□□□ 0.01
CPSF1-214ENST00000622776 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.11■□□□□ 0.01
CPSF1-214ENST00000622776 CHTF8P0CG12 524 aa15.11■□□□□ 0.01
CPSF1-214ENST00000622776 RAB5CP51148 216 aa15.11■□□□□ 0.01
CPSF1-214ENST00000622776 ZNF345Q14585 488 aa15.11■□□□□ 0.01
CPSF1-214ENST00000622776 RPS20P60866 119 aaKnown RBP15.1■□□□□ 0.01
CPSF1-214ENST00000622776 RASL11AQ6T310 242 aa15.1■□□□□ 0.01
CPSF1-214ENST00000622776 OR2D3Q8NGH3 330 aa15.1■□□□□ 0.01
CPSF1-214ENST00000622776 CACNG7P62955 275 aa15.09■□□□□ 0.01
CPSF1-214ENST00000622776 C11orf52Q96A22 123 aa15.09■□□□□ 0.01
CPSF1-214ENST00000622776 CENPWQ5EE01 88 aa15.08■□□□□ 0
CPSF1-214ENST00000622776 SPACA4Q8TDM5 124 aa15.08■□□□□ 0
CPSF1-214ENST00000622776 PGLYRP4Q96LB8 373 aa15.08■□□□□ 0
CPSF1-214ENST00000622776 NIT2Q9NQR4 276 aa15.07■□□□□ 0
CPSF1-214ENST00000622776 C19orf71A6NCJ1 209 aa15.06■□□□□ 0
CPSF1-214ENST00000622776 MANBALQ9NQG1 85 aa15.06■□□□□ 0
CPSF1-214ENST00000622776 GNG13Q9P2W3 67 aa15.06■□□□□ 0
CPSF1-214ENST00000622776 UBE2L6O14933 153 aa15.05■□□□□ -0
CPSF1-214ENST00000622776 CCL20P78556 96 aa15.05■□□□□ -0
CPSF1-214ENST00000622776 WDR73Q6P4I2 378 aa15.05■□□□□ -0
CPSF1-214ENST00000622776 PLAC8Q9NZF1 115 aa15.05■□□□□ -0
CPSF1-214ENST00000622776 KANTRA0A1W2PQU2 76 aa15.04■□□□□ -0
CPSF1-214ENST00000622776 HMSDA8MTL9 139 aa15.04■□□□□ -0
CPSF1-214ENST00000622776 F2Z2F3 143 aa15.04■□□□□ -0
CPSF1-214ENST00000622776 BCL2L11O43521 198 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms