RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 DIRC1Q969H9 104 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 LYPD6Q86Y78 171 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 LINC00269Q8N2A0 174 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 TRBV10-1A0A0K0K1A3 114 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 CTRLP40313 264 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 LYPD6BQ8NI32 183 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 ETDBQ3ZM63 59 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 ANKRD29Q8N6D5 301 aa8.61□□□□□ -1.03
CLIP1-219ENST00000620786 NTN5Q8WTR8 489 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-219ENST00000620786 REG3AQ06141 175 aa8.6□□□□□ -1.03
CLIP1-219ENST00000620786 KIAA1549LQ6ZVL6 1849 aa8.6□□□□□ -1.03
CLIP1-219ENST00000620786 P0DMU3 169 aa8.6□□□□□ -1.03
CLIP1-219ENST00000620786 FAM231AP0DMU4 169 aa8.6□□□□□ -1.03
CLIP1-219ENST00000620786 FAM231CP0DMU5 169 aa8.6□□□□□ -1.03
CLIP1-219ENST00000620786 ZNF106Q9H2Y7 1883 aaKnown RBP8.6□□□□□ -1.03
CLIP1-219ENST00000620786 H3BQ85 93 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 CRYBA4P53673 196 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 C10orf99Q6UWK7 81 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 MUC6Q6W4X9 2439 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 DYSFO75923 2080 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 CHKB-CPT1BH3BT56 60 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 FSTL3O95633 263 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 Q6ZVH6 145 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 ODF3Q96PU9 254 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 LINC00574Q9H8X3 128 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 MIFP14174 115 aa8.59□□□□□ -1.03
CLIP1-219ENST00000620786 IGKV1D-37A0A075B6S9 117 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 K7EQG2 157 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 LINC00173Q6ZV60 143 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 ZNF702PQ9H963 129 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 CEMP1Q6PRD7 247 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-219ENST00000620786 MED13Q9UHV7 2174 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 Q6ZUT4 128 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 MIR7-3HGQ8N6C7 128 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 DOCK11Q5JSL3 2073 aa8.58□□□□□ -1.04
CLIP1-219ENST00000620786 A4D1N5 150 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.57□□□□□ -1.04
CLIP1-219ENST00000620786 C20orf173Q96LM9 149 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 NBASA2RRP1 2371 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 PCNX1Q96RV3 2341 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 TRAV10A0A0B4J240 114 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 NREPQ16612 68 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 ZFAND2AQ8N6M9 145 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 C11orf86A6NJI1 115 aa8.57□□□□□ -1.04
CLIP1-219ENST00000620786 C20orf203Q8NBC4 194 aa8.56□□□□□ -1.04
CLIP1-219ENST00000620786 LINC01006Q8NI28 216 aa8.56□□□□□ -1.04
CLIP1-219ENST00000620786 PSMG3-AS1Q96PY0 264 aa8.56□□□□□ -1.04
CLIP1-219ENST00000620786 K7EP13 123 aa8.56□□□□□ -1.04
CLIP1-219ENST00000620786 M0R2N4 97 aa8.56□□□□□ -1.04
CLIP1-219ENST00000620786 CHCHD10Q8WYQ3 142 aaPredicted RBP8.56□□□□□ -1.04
CLIP1-219ENST00000620786 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-219ENST00000620786 IGLV2-18A0A075B6J9 118 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 A0A087WZ39 114 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 LY6LH3BQJ8 138 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 SPANXDQ9BXN6 97 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 IGHV1-58A0A0C4DH39 117 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 LY6G6CO95867 125 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 COX7BP24311 80 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 ZNF80P51504 273 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-219ENST00000620786 C1orf229Q6ZS94 237 aaPredicted RBP8.55□□□□□ -1.04
CLIP1-219ENST00000620786 HIGD2AQ9BW72 106 aa8.55□□□□□ -1.04
CLIP1-219ENST00000620786 H0Y9J4 135 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 LECT2O14960 151 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 NFE4Q86UQ8 179 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 EBI3Q14213 229 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 UFSP1Q6NVU6 142 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 CACNA1HO95180 2353 aa8.54□□□□□ -1.04
CLIP1-219ENST00000620786 CRYGBP07316 175 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 FAM19A1Q7Z5A9 133 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 SMR3AQ99954 134 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 PLA2G2EQ9NZK7 142 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 PRB2P02812 416 aaPredicted RBP8.53□□□□□ -1.04
CLIP1-219ENST00000620786 ANKRD39Q53RE8 183 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 C18orf65Q6ZTR6 163 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 C7orf33Q8WU49 177 aa8.53□□□□□ -1.04
CLIP1-219ENST00000620786 C19orf71A6NCJ1 209 aa8.52□□□□□ -1.04
CLIP1-219ENST00000620786 E9PLD3 99 aa8.52□□□□□ -1.04
CLIP1-219ENST00000620786 PSMB8P28062 276 aa8.52□□□□□ -1.04
CLIP1-219ENST00000620786 H7C423 109 aa8.52□□□□□ -1.05
CLIP1-219ENST00000620786 MP68P56378 58 aa8.52□□□□□ -1.05
CLIP1-219ENST00000620786 LINC00467Q9BRT7 94 aa8.52□□□□□ -1.05
CLIP1-219ENST00000620786 TNRC6BQ9UPQ9 1833 aaKnown RBP8.51□□□□□ -1.05
CLIP1-219ENST00000620786 A0A1B0GX51 115 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 P0C879 139 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 FAM19A5Q7Z5A7 132 aaPredicted RBP8.51□□□□□ -1.05
CLIP1-219ENST00000620786 NEXN-AS1Q8NBZ9 246 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 KIR2DL5BQ8NHK3 375 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 ACYP1P07311 99 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 GDF5OSQ5U4N7 250 aa8.51□□□□□ -1.05
CLIP1-219ENST00000620786 SPTAN1Q13813 2472 aaKnown RBP8.5□□□□□ -1.05
CLIP1-219ENST00000620786 ABCA1O95477 2261 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 CFAP126Q5VTH2 177 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 ZFAND3Q9H8U3 227 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 NUPR1O60356 82 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 CLEC2BQ92478 149 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 CITED1Q99966 193 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 BRWD1-AS2P59051 145 aa8.5□□□□□ -1.05
CLIP1-219ENST00000620786 BBC3Q96PG8 261 aaPredicted RBP8.5□□□□□ -1.05
CLIP1-219ENST00000620786 TNRC6AQ8NDV7 1962 aaKnown RBP8.5□□□□□ -1.05
CLIP1-219ENST00000620786 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.5□□□□□ -1.056e-7■■■■■ 33
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms