RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MRAPQ8TCY5 172 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 IGLV1-51P01701 117 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 Q6ZTI0 123 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 ODF3Q96PU9 254 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 PTTG1IPP53801 180 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 COX8CQ7Z4L0 72 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 SPXQ9BT56 116 aa11.56□□□□□ -0.56
CPSF1-213ENST00000620219 IGHV3-64A0A075B6Q5 118 aa11.55□□□□□ -0.56
CPSF1-213ENST00000620219 RBMY1BA6NDE4 496 aaKnown RBP11.55□□□□□ -0.56
CPSF1-213ENST00000620219 RBMY1EA6NEQ0 496 aaKnown RBP11.55□□□□□ -0.56
CPSF1-213ENST00000620219 RBMY1DP0C7P1 496 aaKnown RBP11.55□□□□□ -0.56
CPSF1-213ENST00000620219 ZNF25P17030 456 aaPredicted RBP11.55□□□□□ -0.56
CPSF1-213ENST00000620219 RNASE13Q5GAN3 156 aaKnown RBP11.55□□□□□ -0.56
CPSF1-213ENST00000620219 VCX2Q9H322 139 aa11.55□□□□□ -0.56
CPSF1-213ENST00000620219 IGLC3P0DOY3 106 aa11.55□□□□□ -0.56
CPSF1-213ENST00000620219 DNLZQ5SXM8 178 aa11.55□□□□□ -0.56
CPSF1-213ENST00000620219 TMEM97Q5BJF2 176 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 SNHG12Q9BXW3 62 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 MUC4Q99102 2169 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 RHODO00212 210 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 RASL10AQ92737 203 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 C20orf144Q9BQM9 153 aa11.54□□□□□ -0.56
CPSF1-213ENST00000620219 CHTOPQ9Y3Y2 248 aaKnown RBP11.54□□□□□ -0.56
CPSF1-213ENST00000620219 TRAV2A0A0B4J234 112 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 KIR2DL5BA0A0G2JN68 375 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 KIR2DL5BA0A0G2JPC4 375 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 INSL3P51460 131 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 KIR2DL5AQ8N109 375 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 CHCHD5Q9BSY4 110 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 APOC4P55056 127 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 RPL39P62891 51 aaKnown RBP11.53□□□□□ -0.56
CPSF1-213ENST00000620219 FHL3Q13643 280 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 DPM2O94777 84 aa11.53□□□□□ -0.56
CPSF1-213ENST00000620219 Q8N976 141 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 IGKCP01834 107 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 PRB2P02812 416 aaPredicted RBP11.52□□□□□ -0.56
CPSF1-213ENST00000620219 HERVK_113P61574 105 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 ZC2HC1BQ5TFG8 222 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 AMTNQ6UX39 209 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 C20orf78Q9BR46 151 aa11.52□□□□□ -0.56
CPSF1-213ENST00000620219 MED14OSP0DP75 135 aa11.52□□□□□ -0.57
CPSF1-213ENST00000620219 OR11H2Q8NH07 326 aa11.52□□□□□ -0.57
CPSF1-213ENST00000620219 PDZD2O15018 2839 aa11.52□□□□□ -0.57
CPSF1-213ENST00000620219 A0A0J9YY99 117 aa11.52□□□□□ -0.57
CPSF1-213ENST00000620219 GEMIN7Q9H840 131 aaKnown RBP11.52□□□□□ -0.57
CPSF1-213ENST00000620219 I3L3M4 83 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 RBMY1A1P0DJD3 496 aaKnown RBP11.51□□□□□ -0.57
CPSF1-213ENST00000620219 RBMY1CP0DJD4 496 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 RBMY1FQ15415 496 aaKnown RBP11.51□□□□□ -0.57
CPSF1-213ENST00000620219 CNFNQ9BYD5 112 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 F5H768 121 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 TTTY13Q9BZ97 58 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 MRPL35Q9NZE8 188 aaKnown RBP11.51□□□□□ -0.57
CPSF1-213ENST00000620219 OTOGQ6ZRI0 2925 aa11.51□□□□□ -0.57
CPSF1-213ENST00000620219 DAD1P61803 113 aa11.5□□□□□ -0.57
CPSF1-213ENST00000620219 PRADC1Q9BSG0 188 aa11.5□□□□□ -0.57
CPSF1-213ENST00000620219 KRTAP10-3P60369 221 aa11.5□□□□□ -0.57
CPSF1-213ENST00000620219 MORN3Q6PF18 240 aaPredicted RBP11.5□□□□□ -0.57
CPSF1-213ENST00000620219 ZNF479Q96JC4 524 aa11.5□□□□□ -0.57
CPSF1-213ENST00000620219 CRXO43186 299 aaPredicted RBP11.5□□□□□ -0.57
CPSF1-213ENST00000620219 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-213ENST00000620219 IGKV2-29A2NJV5 120 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-213ENST00000620219 TMEM263Q8WUH6 116 aaKnown RBP11.49□□□□□ -0.57
CPSF1-213ENST00000620219 U3KQK5 164 aa11.49□□□□□ -0.57
CPSF1-213ENST00000620219 ZNF469Q96JG9 3925 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-213ENST00000620219 ANKRD39Q53RE8 183 aa11.49□□□□□ -0.57
CPSF1-213ENST00000620219 MPV17L2Q567V2 206 aa11.49□□□□□ -0.57
CPSF1-213ENST00000620219 NRACQ8N912 160 aa11.49□□□□□ -0.57
CPSF1-213ENST00000620219 C16orf74Q96GX8 76 aa11.49□□□□□ -0.57
CPSF1-213ENST00000620219 SRSF9Q13242 221 aaKnown RBP eCLIP11.49□□□□□ -0.57
CPSF1-213ENST00000620219 A0A096LNJ9 63 aa11.48□□□□□ -0.57
CPSF1-213ENST00000620219 PAPPA-AS1Q5QFB9 102 aa11.48□□□□□ -0.57
CPSF1-213ENST00000620219 ZNF575Q86XF7 245 aa11.48□□□□□ -0.57
CPSF1-213ENST00000620219 KRTAP24-1Q3LI83 254 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 C1orf158Q8N1D5 194 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 ZFP2Q6ZN57 461 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 Q6ZVH6 145 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 TRAV13-1A0A0B4J241 112 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 GCSHP23434 173 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 LINC01545Q5VT33 79 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 C9orf85Q96MD7 179 aa11.47□□□□□ -0.57
CPSF1-213ENST00000620219 OPRPNQ99935 248 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-213ENST00000620219 CRYGDP07320 174 aa11.46□□□□□ -0.57
CPSF1-213ENST00000620219 COL5A1-AS1Q5SY13 56 aa11.46□□□□□ -0.57
CPSF1-213ENST00000620219 TMEM101Q96IK0 257 aa11.46□□□□□ -0.57
CPSF1-213ENST00000620219 FAM110AQ9BQ89 295 aa11.46□□□□□ -0.58
CPSF1-213ENST00000620219 PCP2Q8IVA1 136 aa11.45□□□□□ -0.58
CPSF1-213ENST00000620219 RAB37Q96AX2 223 aa11.45□□□□□ -0.58
CPSF1-213ENST00000620219 CEMP1Q6PRD7 247 aaPredicted RBP11.45□□□□□ -0.58
CPSF1-213ENST00000620219 VAMP3Q15836 100 aa11.45□□□□□ -0.58
CPSF1-213ENST00000620219 SHISA2Q6UWI4 295 aa11.45□□□□□ -0.58
CPSF1-213ENST00000620219 FAM19A4Q96LR4 140 aa11.45□□□□□ -0.58
CPSF1-213ENST00000620219 CFAP126Q5VTH2 177 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 C2orf88Q9BSF0 95 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 ADARB2-AS1A8MUL3 147 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 LGALS3P17931 250 aaKnown RBP11.44□□□□□ -0.58
CPSF1-213ENST00000620219 GAGE6Q13070 117 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 LGALS9BQ3B8N2 356 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 LGALS9CQ6DKI2 356 aa11.44□□□□□ -0.58
CPSF1-213ENST00000620219 TOMM7Q9P0U1 55 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 271.7 ms