RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGHV3-30-5P0DP03 117 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 FAM3BP58499 235 aaPredicted RBP9.13□□□□□ -0.95
LINC00540-202ENST00000616974 OR10J3Q5JRS4 329 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 NTM-AS1Q6ZSK4 140 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 GATD1Q8NB37 220 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 TRBV7-3A0A075B6L6 115 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 SMIM17P0DL12 118 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 DPH3P1Q9H4G8 78 aa9.13□□□□□ -0.95
LINC00540-202ENST00000616974 TNP2Q05952 138 aa9.12□□□□□ -0.95
LINC00540-202ENST00000616974 C15orf54Q8N8G6 183 aa9.12□□□□□ -0.95
LINC00540-202ENST00000616974 SMIM27A0A1W2PRY6 76 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 TMEM218A2RU14 115 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 SMKR1H3BMG3 65 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 RNF185Q96GF1 192 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 A0A1B0GUT8 65 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 FUSP35637 526 aaKnown RBP eCLIP9.11□□□□□ -0.95
LINC00540-202ENST00000616974 RPS10P46783 165 aaKnown RBP9.11□□□□□ -0.95
LINC00540-202ENST00000616974 RPL36AP83881 106 aaKnown RBP9.11□□□□□ -0.95
LINC00540-202ENST00000616974 LELP1Q5T871 98 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 C1orf134Q5TEV5 83 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 AMN1Q8IY45 258 aa9.11□□□□□ -0.95
LINC00540-202ENST00000616974 RPL36ALQ969Q0 106 aaKnown RBP9.11□□□□□ -0.95
LINC00540-202ENST00000616974 TRBV10-1A0A0K0K1A3 114 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 TRGC1P0CF51 173 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 DNAH10OSP0CZ25 163 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 MRPL54Q6P161 138 aaKnown RBP9.1□□□□□ -0.95
LINC00540-202ENST00000616974 WDR73Q6P4I2 378 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 DAZ4Q86SG3 579 aaKnown RBP9.1□□□□□ -0.95
LINC00540-202ENST00000616974 GFRA4Q9GZZ7 299 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 DAZ3Q9NR90 486 aaKnown RBP9.1□□□□□ -0.95
LINC00540-202ENST00000616974 NCR2O95944 276 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 Q6ZRN7 208 aaPredicted RBP9.1□□□□□ -0.95
LINC00540-202ENST00000616974 C6orf223Q8N319 242 aa9.1□□□□□ -0.95
LINC00540-202ENST00000616974 A0A1B0GVY2 172 aa9.09□□□□□ -0.95
LINC00540-202ENST00000616974 CAMPP49913 170 aa9.09□□□□□ -0.95
LINC00540-202ENST00000616974 TIRAPP58753 221 aa9.09□□□□□ -0.95
LINC00540-202ENST00000616974 LINC00862A6NCI5 91 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 PRSS29PA6NIE9 313 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 F8W036 122 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 NAT8BQ9UHF3 227 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 RASL11AQ6T310 242 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 SH2D6Q7Z4S9 175 aa9.08□□□□□ -0.96
LINC00540-202ENST00000616974 FAM231BA6NCW3 169 aa9.07□□□□□ -0.96
LINC00540-202ENST00000616974 RAB4AP20338 218 aa9.07□□□□□ -0.96
LINC00540-202ENST00000616974 APOBP04114 4563 aaKnown RBP9.07□□□□□ -0.96
LINC00540-202ENST00000616974 Q8N976 141 aa9.07□□□□□ -0.96
LINC00540-202ENST00000616974 TMEM191AQ9H0A3 160 aa9.07□□□□□ -0.96
LINC00540-202ENST00000616974 Q9HAA7 133 aa9.07□□□□□ -0.96
LINC00540-202ENST00000616974 TRBV6-8A0A0A6YYG3 113 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 MPV17L2Q567V2 206 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 LINC01556Q5JQF7 62 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 UQCC3Q6UW78 93 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 NIT1Q86X76 327 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 NIT2Q9NQR4 276 aa9.06□□□□□ -0.96
LINC00540-202ENST00000616974 TRAV8-6A0A0B4J262 113 aa9.05□□□□□ -0.96
LINC00540-202ENST00000616974 A0A1B0GXF2 115 aa9.05□□□□□ -0.96
LINC00540-202ENST00000616974 TTC32Q5I0X7 151 aa9.04□□□□□ -0.96
LINC00540-202ENST00000616974 RYR1P21817 5038 aa9.04□□□□□ -0.96
LINC00540-202ENST00000616974 PNRC1Q12796 327 aaPredicted RBP9.04□□□□□ -0.96
LINC00540-202ENST00000616974 MRPL51Q4U2R6 128 aaKnown RBP9.04□□□□□ -0.96
LINC00540-202ENST00000616974 BORCS7Q96B45 105 aa9.04□□□□□ -0.96
LINC00540-202ENST00000616974 SEC11CQ9BY50 192 aa9.04□□□□□ -0.96
LINC00540-202ENST00000616974 GAGE6Q13070 117 aa9.03□□□□□ -0.96
LINC00540-202ENST00000616974 RIGQ13278 110 aa9.03□□□□□ -0.96
LINC00540-202ENST00000616974 C10orf91Q5T1B1 145 aa9.03□□□□□ -0.96
LINC00540-202ENST00000616974 HSPG2P98160 4391 aa9.03□□□□□ -0.96
LINC00540-202ENST00000616974 SDHAF1A6NFY7 115 aa9.02□□□□□ -0.96
LINC00540-202ENST00000616974 KRTAP10-2P60368 255 aa9.02□□□□□ -0.96
LINC00540-202ENST00000616974 NRACQ8N912 160 aa9.02□□□□□ -0.96
LINC00540-202ENST00000616974 KLK12Q9UKR0 248 aa9.02□□□□□ -0.96
LINC00540-202ENST00000616974 H7C1H1 209 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 WFDC2Q14508 124 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 FAM104BQ5XKR9 115 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 CLPSL2Q6UWE3 100 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 SMIM15Q7Z3B0 74 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 SLC7A5P1Q8MH63 180 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 MAPKAPK5-AS1Q8N8E1 139 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 CHCHD5Q9BSY4 110 aa9.02□□□□□ -0.97
LINC00540-202ENST00000616974 A0A087WWC5 75 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 IBA57-AS1B1ANH7 110 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 TMEM262E9PQX1 116 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 MT-ND4LP03901 98 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 URGCP-MRPS24S4R325 110 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 HERC2O95714 4834 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 HBBP68871 147 aa9.01□□□□□ -0.97
LINC00540-202ENST00000616974 IGLV4-60A0A075B6I1 120 aa9□□□□□ -0.97
LINC00540-202ENST00000616974 ATRAIDQ6UW56 229 aa9□□□□□ -0.97
LINC00540-202ENST00000616974 LINC00336Q6ZUF6 198 aa9□□□□□ -0.97
LINC00540-202ENST00000616974 TMEM70Q9BUB7 260 aa9□□□□□ -0.97
LINC00540-202ENST00000616974 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.99□□□□□ -0.97
LINC00540-202ENST00000616974 IGKV2-29A2NJV5 120 aaPredicted RBP8.99□□□□□ -0.97
LINC00540-202ENST00000616974 C7orf77A4D0Y5 90 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 D6R8Y8 96 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 IQCJQ1A5X6 159 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 ANAPC16Q96DE5 110 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 CARHSP1Q9Y2V2 147 aaKnown RBP8.99□□□□□ -0.97
LINC00540-202ENST00000616974 LECT2O14960 151 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 PPP1R2P9O14990 202 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 POLR2KP53803 58 aaKnown RBP8.99□□□□□ -0.97
LINC00540-202ENST00000616974 RBX1P62877 108 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms