RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ISOC2Q96AB3 205 aa10.32□□□□□ -0.76
LIG1-219ENST00000600055 PGLYRP4Q96LB8 373 aa10.32□□□□□ -0.76
LIG1-219ENST00000600055 CNFNQ9BYD5 112 aa10.32□□□□□ -0.76
LIG1-219ENST00000600055 TRBV7-3A0A075B6L6 115 aa10.31□□□□□ -0.76
LIG1-219ENST00000600055 IGHV3-38A0A0C4DH36 116 aa10.31□□□□□ -0.76
LIG1-219ENST00000600055 TRGC1P0CF51 173 aa10.31□□□□□ -0.76
LIG1-219ENST00000600055 ANAPC16Q96DE5 110 aa10.31□□□□□ -0.76
LIG1-219ENST00000600055 FAM231BA6NCW3 169 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 IGHV3-30P01768 117 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 IGHV3-33P01772 117 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 IGHV3-30-3P0DP02 117 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 IGHV3-30-5P0DP03 117 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 C10orf91Q5T1B1 145 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 SUMO4Q6EEV6 95 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 Q8N3U1 123 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 DPH3P1Q9H4G8 78 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 CARHSP1Q9Y2V2 147 aaKnown RBP10.3□□□□□ -0.76
LIG1-219ENST00000600055 V9GYV3 84 aa10.3□□□□□ -0.76
LIG1-219ENST00000600055 TRAV9-2A0A087WT02 112 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 M0QY20 66 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 FOXA3P55318 350 aaPredicted RBP10.29□□□□□ -0.76
LIG1-219ENST00000600055 LINC01556Q5JQF7 62 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 SVBPQ8N300 66 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 TSKUQ8WUA8 353 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 GFRA4Q9GZZ7 299 aa10.29□□□□□ -0.76
LIG1-219ENST00000600055 HECTD4Q9Y4D8 3996 aa10.28□□□□□ -0.76
LIG1-219ENST00000600055 SNAPINO95295 136 aa10.28□□□□□ -0.76
LIG1-219ENST00000600055 Q6ZRN7 208 aaPredicted RBP10.28□□□□□ -0.76
LIG1-219ENST00000600055 SLC7A5P1Q8MH63 180 aa10.28□□□□□ -0.76
LIG1-219ENST00000600055 BORCS7Q96B45 105 aa10.28□□□□□ -0.76
LIG1-219ENST00000600055 A0A087WWC5 75 aa10.27□□□□□ -0.77
LIG1-219ENST00000600055 HIGD1CA8MV81 97 aa10.27□□□□□ -0.77
LIG1-219ENST00000600055 APOC3P02656 99 aa10.27□□□□□ -0.77
LIG1-219ENST00000600055 BTF3P20290 206 aaKnown RBP10.27□□□□□ -0.77
LIG1-219ENST00000600055 CTDSP1Q9GZU7 261 aa10.27□□□□□ -0.77
LIG1-219ENST00000600055 ADCYAP1P18509 176 aa10.26□□□□□ -0.77
LIG1-219ENST00000600055 RHEBQ15382 184 aa10.26□□□□□ -0.77
LIG1-219ENST00000600055 TRAV26-2A0A0B4J265 109 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 H7C1H1 209 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 K7EP13 123 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 RASL11AQ6T310 242 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 C10orf126Q8N4M7 172 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 NAT8BQ9UHF3 227 aa10.25□□□□□ -0.77
LIG1-219ENST00000600055 A0A1B0GUT8 65 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 IBA57-AS1B1ANH7 110 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 NTM-AS1Q6ZSK4 140 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 SMIM15Q7Z3B0 74 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 DAZ4Q86SG3 579 aaKnown RBP10.24□□□□□ -0.77
LIG1-219ENST00000600055 NIT1Q86X76 327 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 GATD1Q8NB37 220 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 CLRN3Q8NCR9 226 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 NUP35Q8NFH5 326 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 DNAJC30Q96LL9 226 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 DAZ3Q9NR90 486 aaKnown RBP10.24□□□□□ -0.77
LIG1-219ENST00000600055 TMEM242Q9NWH2 141 aa10.24□□□□□ -0.77
LIG1-219ENST00000600055 TRBV6-8A0A0A6YYG3 113 aa10.23□□□□□ -0.77
LIG1-219ENST00000600055 NFE4Q86UQ8 179 aa10.23□□□□□ -0.77
LIG1-219ENST00000600055 IMMP2LQ96T52 175 aa10.23□□□□□ -0.77
LIG1-219ENST00000600055 PKD1P98161 4303 aa10.23□□□□□ -0.77
LIG1-219ENST00000600055 S100PP25815 95 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 KCNIP4Q6PIL6 250 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 DEFB104AQ8WTQ1 72 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 Q9HAA7 133 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 RPS10P5Q9NQ39 176 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 NIT2Q9NQR4 276 aa10.22□□□□□ -0.77
LIG1-219ENST00000600055 A0A1B0GW15 77 aa10.21□□□□□ -0.77
LIG1-219ENST00000600055 SMIM27A0A1W2PRY6 76 aa10.21□□□□□ -0.77
LIG1-219ENST00000600055 C7orf77A4D0Y5 90 aa10.21□□□□□ -0.77
LIG1-219ENST00000600055 S100A8P05109 93 aa10.21□□□□□ -0.77
LIG1-219ENST00000600055 RIGQ13278 110 aa10.21□□□□□ -0.77
LIG1-219ENST00000600055 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.21□□□□□ -0.77
LIG1-219ENST00000600055 RPL39LQ96EH5 51 aaKnown RBP10.21□□□□□ -0.77
LIG1-219ENST00000600055 DNAH11Q96DT5 4516 aa10.21□□□□□ -0.78
LIG1-219ENST00000600055 GAS8-AS1O95177 125 aa10.2□□□□□ -0.78
LIG1-219ENST00000600055 RNF185Q96GF1 192 aa10.2□□□□□ -0.78
LIG1-219ENST00000600055 BTF3L4Q96K17 158 aa10.2□□□□□ -0.78
LIG1-219ENST00000600055 URGCP-MRPS24S4R325 110 aa10.2□□□□□ -0.78
LIG1-219ENST00000600055 TMEM262E9PQX1 116 aa10.19□□□□□ -0.78
LIG1-219ENST00000600055 CHCHD5Q9BSY4 110 aa10.19□□□□□ -0.78
LIG1-219ENST00000600055 TMEM191AQ9H0A3 160 aa10.19□□□□□ -0.78
LIG1-219ENST00000600055 TRAV9-1A0A075B6T8 112 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 A0A087WX48 190 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 RAB4AP20338 218 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 S100A1P23297 94 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 KRTAP10-2P60368 255 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 GAGE6Q13070 117 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 TMEM97Q5BJF2 176 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 SPATA12Q7Z6I5 190 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 AMN1Q8IY45 258 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 KLK12Q9UKR0 248 aa10.18□□□□□ -0.78
LIG1-219ENST00000600055 TRBV25-1A0A075B6N4 114 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 IGHV1-24A0A0C4DH33 117 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 LAGE3Q14657 143 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 IQCJQ1A5X6 159 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 MPV17L2Q567V2 206 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 ATP5L2Q7Z4Y8 100 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 FRZBQ92765 325 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 PKHD1P08F94 4074 aa10.17□□□□□ -0.78
LIG1-219ENST00000600055 A0A087WTM6 91 aa10.16□□□□□ -0.78
LIG1-219ENST00000600055 FUSP35637 526 aaKnown RBP eCLIP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms