RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 C3orf84H3BNL1 204 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 K7EP34 96 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 SH2D1AO60880 128 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 ERCC8Q13216 396 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 LINC01559Q495D7 138 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 AP1S3Q96PC3 154 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 AGPAT4-IT1Q9H0P7 198 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 IGKV2-40A0A087WW87 121 aaPredicted RBP14.15□□□□□ -0.14
LSM4-203ENST00000593829 DEFB4AO15263 64 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 IGKV2D-40P01614 121 aaPredicted RBP14.15□□□□□ -0.14
LSM4-203ENST00000593829 C9orf47Q6ZRZ4 202 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 AMN1Q8IY45 258 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 IFI27L1Q96BM0 104 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 C8orf49Q96NF6 230 aa14.15□□□□□ -0.14
LSM4-203ENST00000593829 TIMM8BQ9Y5J9 83 aaPredicted RBP14.15□□□□□ -0.14
LSM4-203ENST00000593829 SMIM9A6NGZ8 99 aa14.14□□□□□ -0.15
LSM4-203ENST00000593829 CACNG7P62955 275 aa14.14□□□□□ -0.15
LSM4-203ENST00000593829 RBMY1A1P0DJD3 496 aaKnown RBP14.13□□□□□ -0.15
LSM4-203ENST00000593829 RBMY1CP0DJD4 496 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 LEPP41159 167 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 RBMY1FQ15415 496 aaKnown RBP14.13□□□□□ -0.15
LSM4-203ENST00000593829 TMEM78Q5T7P6 136 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 FER1L6-AS1Q8NA97 138 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 IGLC6P0CF74 106 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 OR5A1Q8NGJ0 315 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 VGLL1Q99990 258 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 TPPP3Q9BW30 176 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 CNFNQ9BYD5 112 aa14.13□□□□□ -0.15
LSM4-203ENST00000593829 LOC389332A0A1B0GUA5 103 aa14.12□□□□□ -0.15
LSM4-203ENST00000593829 RBAKDNA6NC62 111 aa14.12□□□□□ -0.15
LSM4-203ENST00000593829 KIR3DS1Q14943 382 aa14.12□□□□□ -0.15
LSM4-203ENST00000593829 HIGD1BQ9P298 99 aa14.12□□□□□ -0.15
LSM4-203ENST00000593829 SNAI2O43623 268 aa14.11□□□□□ -0.15
LSM4-203ENST00000593829 DNAH7Q8WXX0 4024 aa14.1□□□□□ -0.15
LSM4-203ENST00000593829 CKS2P33552 79 aa14.1□□□□□ -0.15
LSM4-203ENST00000593829 NEGR1Q7Z3B1 354 aa14.1□□□□□ -0.15
LSM4-203ENST00000593829 FAM19A4Q96LR4 140 aa14.1□□□□□ -0.15
LSM4-203ENST00000593829 J3KRW8 73 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 NPYP01303 97 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 RRN3P1Q2M238 152 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 ZFAND6Q6FIF0 208 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 LINC01587Q99440 93 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 CASC10Q5T4H9 136 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 C11orf45Q8TAV5 145 aa14.09□□□□□ -0.15
LSM4-203ENST00000593829 A0A1W2PPM0 123 aa14.08□□□□□ -0.16
LSM4-203ENST00000593829 H3BUT2 72 aa14.08□□□□□ -0.16
LSM4-203ENST00000593829 MAP1LC3AQ9H492 121 aa14.08□□□□□ -0.16
LSM4-203ENST00000593829 TRBV7-9A0A0J9YWB2 115 aa14.07□□□□□ -0.16
LSM4-203ENST00000593829 SMIM17P0DL12 118 aa14.07□□□□□ -0.16
LSM4-203ENST00000593829 Q8TAT8 98 aa14.07□□□□□ -0.16
LSM4-203ENST00000593829 NXT2Q9NPJ8 142 aaKnown RBP14.07□□□□□ -0.16
LSM4-203ENST00000593829 KLLNB2CW77 178 aa14.07□□□□□ -0.16
LSM4-203ENST00000593829 RNF185Q96GF1 192 aa14.07□□□□□ -0.16
LSM4-203ENST00000593829 TMSB15BA0A087X1C1 80 aa14.06□□□□□ -0.16
LSM4-203ENST00000593829 TRAV12-3A0A0B4J271 114 aa14.06□□□□□ -0.16
LSM4-203ENST00000593829 FCER1GP30273 86 aa14.06□□□□□ -0.16
LSM4-203ENST00000593829 TWIST1Q15672 202 aa14.06□□□□□ -0.16
LSM4-203ENST00000593829 ZNF575Q86XF7 245 aa14.06□□□□□ -0.16
LSM4-203ENST00000593829 PRM2P04554 102 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 EMP1P54849 157 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 NANOS2P60321 138 aaKnown RBP14.05□□□□□ -0.16
LSM4-203ENST00000593829 ZFAND2AQ8N6M9 145 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 LENEPQ9Y5L5 61 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 HTN1P15515 57 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 RNASE4P34096 147 aaKnown RBP14.05□□□□□ -0.16
LSM4-203ENST00000593829 PCP2Q8IVA1 136 aa14.05□□□□□ -0.16
LSM4-203ENST00000593829 EVI2AP22794 236 aa14.04□□□□□ -0.16
LSM4-203ENST00000593829 ODF1Q14990 250 aa14.04□□□□□ -0.16
LSM4-203ENST00000593829 ATP5LO75964 103 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 SMIM13P0DJ93 91 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 ZNF80P51504 273 aaPredicted RBP14.03□□□□□ -0.16
LSM4-203ENST00000593829 DKK2Q9UBU2 259 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 HHLA3Q9XRX5 114 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 SPCS1Q9Y6A9 102 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 PRSS47A8MTI9 375 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 SPART-AS1P0CW21 52 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 NMUP48645 174 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 CELA1Q9UNI1 258 aa14.03□□□□□ -0.16
LSM4-203ENST00000593829 FABP5P3A8MUU1 101 aa14.02□□□□□ -0.16
LSM4-203ENST00000593829 SMKR1H3BMG3 65 aa14.02□□□□□ -0.16
LSM4-203ENST00000593829 FABP2P12104 132 aa14.02□□□□□ -0.16
LSM4-203ENST00000593829 AZU1P20160 251 aa14.02□□□□□ -0.16
LSM4-203ENST00000593829 PRR9Q5T870 116 aa14.02□□□□□ -0.16
LSM4-203ENST00000593829 TEX48A0A1B0GUV7 120 aa14.01□□□□□ -0.17
LSM4-203ENST00000593829 PHLDA1Q8WV24 401 aaPredicted RBP14.01□□□□□ -0.17
LSM4-203ENST00000593829 C16orf74Q96GX8 76 aa14.01□□□□□ -0.17
LSM4-203ENST00000593829 NUPR2A6NF83 97 aa14□□□□□ -0.17
LSM4-203ENST00000593829 TNFRSF6BO95407 300 aa14□□□□□ -0.17
LSM4-203ENST00000593829 FAM222AQ5U5X8 452 aa14□□□□□ -0.17
LSM4-203ENST00000593829 Q8N8P6 123 aa14□□□□□ -0.17
LSM4-203ENST00000593829 TMEM263Q8WUH6 116 aaKnown RBP14□□□□□ -0.17
LSM4-203ENST00000593829 TM2D2Q9BX73 214 aa14□□□□□ -0.17
LSM4-203ENST00000593829 CSMD3Q7Z407 3707 aa14□□□□□ -0.17
LSM4-203ENST00000593829 IGKCP01834 107 aa14□□□□□ -0.17
LSM4-203ENST00000593829 CEMP1Q6PRD7 247 aaPredicted RBP14□□□□□ -0.17
LSM4-203ENST00000593829 C12orf74Q32Q52 190 aa13.99□□□□□ -0.17
LSM4-203ENST00000593829 IGLV2-18A0A075B6J9 118 aa13.98□□□□□ -0.17
LSM4-203ENST00000593829 PLAC8L1A1L4L8 177 aa13.98□□□□□ -0.17
LSM4-203ENST00000593829 DPM2O94777 84 aa13.98□□□□□ -0.17
LSM4-203ENST00000593829 TAL2Q16559 108 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms