RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 NABP2Q9BQ15 211 aa4.36□□□□□ -1.71
SMAD4-208ENST00000589706 CALYQ9NYX4 217 aa4.36□□□□□ -1.71
SMAD4-208ENST00000589706 KIAA2026Q5HYC2 2103 aa4.36□□□□□ -1.71
SMAD4-208ENST00000589706 PRKDCP78527 4128 aaKnown RBP4.35□□□□□ -1.71
SMAD4-208ENST00000589706 TRAV12-2A0A075B6T6 113 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 TRGV5A0A0B4J1U4 118 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 IGKV1D-43A0A0B4J1Z2 117 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 LY6LH3BQJ8 138 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 FKBP2P26885 142 aaKnown RBP4.35□□□□□ -1.71
SMAD4-208ENST00000589706 IFI27P40305 119 aaPredicted RBP4.35□□□□□ -1.71
SMAD4-208ENST00000589706 MAGEA5P43359 124 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 HIST1H4AP62805 103 aaKnown RBP4.35□□□□□ -1.71
SMAD4-208ENST00000589706 CCL8P80075 99 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 ZNF56Q15929 161 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 TMEM155Q4W5P6 130 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 Q6ZT83 130 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 C5orf38Q86SI9 138 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 ZNF329Q86UD4 541 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 NDUFA11Q86Y39 141 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 MKXQ8IYA7 352 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 OVOL2Q9BRP0 275 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 SHANK2-AS3Q9BTD1 123 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 TTTY12Q9BZ98 90 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 NXT2Q9NPJ8 142 aaKnown RBP4.35□□□□□ -1.71
SMAD4-208ENST00000589706 SPRR3Q9UBC9 169 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 PRO1854Q9UHT4 67 aa4.35□□□□□ -1.71
SMAD4-208ENST00000589706 IGKV1-27A0A075B6S5 117 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 A0A096LNT2 108 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 TRAV12-1A0A0B4J245 112 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 ENSAO43768 121 aaKnown RBP4.34□□□□□ -1.71
SMAD4-208ENST00000589706 PYYP10082 97 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 SLC25A16P16260 332 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 LOXP28300 417 aaPredicted RBP4.34□□□□□ -1.71
SMAD4-208ENST00000589706 MYCNOSP40205 109 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 EFNA4P52798 201 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 MRPS36P82909 103 aaKnown RBP4.34□□□□□ -1.71
SMAD4-208ENST00000589706 EIF4EBP1Q13541 118 aaPredicted RBP4.34□□□□□ -1.71
SMAD4-208ENST00000589706 LINC01620Q4KN68 170 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 C10orf128Q5T292 105 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 GTSCR1Q86UQ5 136 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 C1orf158Q8N1D5 194 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 ZNF799Q96GE5 643 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 RTL8AQ9BWD3 113 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 LAMTOR3Q9UHA4 124 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 LINC00527Q9UJ94 153 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 TIMM8BQ9Y5J9 83 aaPredicted RBP4.34□□□□□ -1.71
SMAD4-208ENST00000589706 SERP1Q9Y6X1 66 aa4.34□□□□□ -1.71
SMAD4-208ENST00000589706 MED12Q93074 2177 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 IGHV4-30-2A0A087WSY4 118 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 TMSB15BA0A087X1C1 80 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 SMIM26A0A096LP01 95 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 H0YGG7 62 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 H3BTX0 84 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 H7C1H1 209 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 ZNF137PP52743 207 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 LOXL1Q08397 574 aaPredicted RBP4.33□□□□□ -1.72
SMAD4-208ENST00000589706 FAM104BQ5XKR9 115 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 ZNF497Q6ZNH5 498 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 SDIM1Q6ZPB5 146 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 Q6ZRP5 223 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 SERP2Q8N6R1 65 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 ZNF714Q96N38 554 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 DEFB126Q9BYW3 111 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 DYNLRB1Q9NP97 96 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 KLK5Q9Y337 293 aaPredicted RBP4.33□□□□□ -1.72
SMAD4-208ENST00000589706 PCNX3Q9H6A9 2034 aa4.33□□□□□ -1.72
SMAD4-208ENST00000589706 ROS1P08922 2347 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 MALRD1Q5VYJ5 2156 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 A0A0B4J2C4 111 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 PGPA6NDG6 321 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 K7EQD1 137 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 LEPP41159 167 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 ERVK-16P61578 105 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 NPC2P61916 151 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 ZNF876PQ49A33 203 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 ADAMTSL4-AS1Q5T5F5 129 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 Q8N8P6 123 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 FAM167A-AS1Q96KT0 104 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 FAM19A4Q96LR4 140 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 FAM173AQ9BQD7 235 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 PKIGQ9Y2B9 76 aa4.32□□□□□ -1.72
SMAD4-208ENST00000589706 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-208ENST00000589706 TRBV30A0A0K0K1B3 111 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 F8VRH5 84 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 UPK2O00526 184 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 MRPS12O15235 138 aaKnown RBP4.31□□□□□ -1.72
SMAD4-208ENST00000589706 ZFAND5O76080 213 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 CLPSP04118 112 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 CFC1BP0CG36 223 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 CFC1P0CG37 223 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 SSR4P51571 173 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 RPL18AQ02543 176 aaKnown RBP4.31□□□□□ -1.72
SMAD4-208ENST00000589706 EXOC3-AS1Q8N2X6 119 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 C9orf106Q8NAJ2 232 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 NFAM1Q8NET5 270 aaPredicted RBP4.31□□□□□ -1.72
SMAD4-208ENST00000589706 ITLN1Q8WWA0 313 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 NABP1Q96AH0 204 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 METTL26Q96S19 204 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 UPK3BQ9BT76 320 aa4.31□□□□□ -1.72
SMAD4-208ENST00000589706 PAXXQ9BUH6 204 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms