RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CHCHD5Q9BSY4 110 aa7.65□□□□□ -1.18
LIG3-209ENST00000586435 MLST8Q9BVC4 326 aa7.65□□□□□ -1.18
LIG3-209ENST00000586435 G3V3Q6 166 aa7.64□□□□□ -1.19
LIG3-209ENST00000586435 HNRNPA3P51991 378 aaKnown RBP7.64□□□□□ -1.19
LIG3-209ENST00000586435 RPL19P84098 196 aaKnown RBP7.64□□□□□ -1.19
LIG3-209ENST00000586435 KRTAP26-1Q6PEX3 210 aa7.64□□□□□ -1.19
LIG3-209ENST00000586435 NTM-AS1Q6ZSK4 140 aa7.64□□□□□ -1.19
LIG3-209ENST00000586435 DAZAP1Q96EP5 407 aaKnown RBP7.64□□□□□ -1.19
LIG3-209ENST00000586435 CYTL1Q9NRR1 136 aa7.64□□□□□ -1.19
LIG3-209ENST00000586435 PAGE4O60829 102 aa7.63□□□□□ -1.19
LIG3-209ENST00000586435 SPANXN1Q5VSR9 72 aa7.63□□□□□ -1.19
LIG3-209ENST00000586435 TRBV25-1A0A075B6N4 114 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 RBX1P62877 108 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 CIRBPQ14011 172 aaKnown RBP7.62□□□□□ -1.19
LIG3-209ENST00000586435 IQCJQ1A5X6 159 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 CLRN3Q8NCR9 226 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 AP1S3Q96PC3 154 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 KIF25-AS1Q9Y6Z4 181 aa7.62□□□□□ -1.19
LIG3-209ENST00000586435 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.62□□□□□ -1.19
LIG3-209ENST00000586435 SCO2A0A1W2PP80 73 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 F5H697 171 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 ARPC5O15511 151 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 CNBPP62633 177 aaKnown RBP7.61□□□□□ -1.19
LIG3-209ENST00000586435 SDIM1Q6ZPB5 146 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 BAGE2Q86Y30 109 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 LINC00269Q8N2A0 174 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 MBD3L1Q8WWY6 194 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 DERL1Q9BUN8 251 aa7.61□□□□□ -1.19
LIG3-209ENST00000586435 UMAD1C9J7I0 102 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 PANO1I0J062 215 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 PFDN1O60925 122 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 SMIM17P0DL12 118 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 GAGE6Q13070 117 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 CLPSL2Q6UWE3 100 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 Q6ZRU5 148 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 BATF3Q9NR55 127 aa7.6□□□□□ -1.19
LIG3-209ENST00000586435 TRAV8-4A0A0B4J246 113 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 IGHV1-24A0A0C4DH33 117 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 A0A0D9SG52 128 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 MUC21A0A0G2JKD1 596 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 MUC21A0A140T8X8 626 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 P01737 135 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 MT1HL1P0DM35 61 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 REG3AQ06141 175 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 ZNF345Q14585 488 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 SFT2D1Q8WV19 159 aa7.59□□□□□ -1.19
LIG3-209ENST00000586435 A0A1B0GUV1 79 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 H7C1H1 209 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 M0QY20 66 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 C20orf203Q8NBC4 194 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 FAM213BQ8TBF2 198 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 RNF185Q96GF1 192 aa7.58□□□□□ -1.2
LIG3-209ENST00000586435 IGLC6P0CF74 106 aa7.57□□□□□ -1.2
LIG3-209ENST00000586435 GZMBP10144 247 aa7.57□□□□□ -1.2
LIG3-209ENST00000586435 TMUB2Q71RG4 321 aa7.57□□□□□ -1.2
LIG3-209ENST00000586435 KCNRGQ8N5I3 272 aa7.57□□□□□ -1.2
LIG3-209ENST00000586435 UBR4Q5T4S7 5183 aa7.57□□□□□ -1.2
LIG3-209ENST00000586435 IGLV10-54A0A075B6I4 117 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 IGHV3-64A0A075B6Q5 118 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.56□□□□□ -1.2
LIG3-209ENST00000586435 hDV102S1A0JD36 115 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 RPL35P42766 123 aaKnown RBP7.56□□□□□ -1.2
LIG3-209ENST00000586435 SUMO4Q6EEV6 95 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 C11orf52Q96A22 123 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 PGLYRP4Q96LB8 373 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 AP5S1Q9NUS5 200 aa7.56□□□□□ -1.2
LIG3-209ENST00000586435 A0A1B0GV50 99 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 MGPP08493 103 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 H2AFB1P0C5Y9 115 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 RPS20P60866 119 aaKnown RBP7.55□□□□□ -1.2
LIG3-209ENST00000586435 SSTP61278 116 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 CACNG7P62955 275 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 FER1L6-AS1Q8NA97 138 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 SPACA4Q8TDM5 124 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 SMIM12Q96EX1 92 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 TMEM243Q9BU79 118 aa7.55□□□□□ -1.2
LIG3-209ENST00000586435 IGLV4-60A0A075B6I1 120 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 A0A087WYN8 130 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 SLPIP03973 132 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 RASL11AQ6T310 242 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 GFRA4Q9GZZ7 299 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 MANBALQ9NQG1 85 aa7.54□□□□□ -1.2
LIG3-209ENST00000586435 C19orf71A6NCJ1 209 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 HMSDA8MTL9 139 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 F2Z2F3 143 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 TRGC1P0CF51 173 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 NKX2-5P52952 324 aaPredicted RBP7.53□□□□□ -1.2
LIG3-209ENST00000586435 CENPWQ5EE01 88 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 WDR73Q6P4I2 378 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 OR2D3Q8NGH3 330 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 PLAC8Q9NZF1 115 aa7.53□□□□□ -1.2
LIG3-209ENST00000586435 KANTRA0A1W2PQU2 76 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 XKRY2A2RUG3 117 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 SMLR1H3BR10 107 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 BCL2L11O43521 198 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 EIF5AP63241 154 aaKnown RBP7.52□□□□□ -1.21
LIG3-209ENST00000586435 RGS21Q2M5E4 152 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 TPPP3Q9BW30 176 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 DPH3P1Q9H4G8 78 aa7.52□□□□□ -1.21
LIG3-209ENST00000586435 NIT2Q9NQR4 276 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms