RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 SMIM12Q96EX1 92 aa14.2□□□□□ -0.14
SHMT1-210ENST00000583780 CXCL1P09341 107 aa14.19□□□□□ -0.14
SHMT1-210ENST00000583780 TEX261Q6UWH6 196 aa14.19□□□□□ -0.14
SHMT1-210ENST00000583780 SAMD10Q9BYL1 202 aa14.19□□□□□ -0.14
SHMT1-210ENST00000583780 COX11Q9Y6N1 276 aa14.19□□□□□ -0.14
SHMT1-210ENST00000583780 GAGE12JA6NER3 117 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 TMEM250H0YL14 139 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 HNRNPA3P51991 378 aaKnown RBP14.18□□□□□ -0.14
SHMT1-210ENST00000583780 GAGE1Q13065 139 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 GAGE4Q13068 117 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 GAGE5Q13069 117 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 GAGE13Q4V321 117 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 FAM74A4Q5TZK3 123 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 OR2D3Q8NGH3 330 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 BIN3Q9NQY0 253 aa14.18□□□□□ -0.14
SHMT1-210ENST00000583780 MUC21A0A0G2JKD1 596 aa14.17□□□□□ -0.14
SHMT1-210ENST00000583780 MUC21A0A140T8X8 626 aa14.17□□□□□ -0.14
SHMT1-210ENST00000583780 C19orf71A6NCJ1 209 aa14.17□□□□□ -0.14
SHMT1-210ENST00000583780 OR10AG1Q8NH19 301 aa14.17□□□□□ -0.14
SHMT1-210ENST00000583780 FAM210AQ96ND0 272 aa14.17□□□□□ -0.14
SHMT1-210ENST00000583780 A0A087WWL8 130 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 P01737 135 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 GZMBP10144 247 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 SSTP61278 116 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 ZFP2Q6ZN57 461 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 SFRP2Q96HF1 295 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 TPPP3Q9BW30 176 aa14.16□□□□□ -0.14
SHMT1-210ENST00000583780 RHODO00212 210 aa14.15□□□□□ -0.14
SHMT1-210ENST00000583780 SPANXN1Q5VSR9 72 aa14.15□□□□□ -0.14
SHMT1-210ENST00000583780 SNAI2O43623 268 aa14.14□□□□□ -0.15
SHMT1-210ENST00000583780 RPS20P60866 119 aaKnown RBP14.14□□□□□ -0.15
SHMT1-210ENST00000583780 UFSP1Q6NVU6 142 aa14.14□□□□□ -0.15
SHMT1-210ENST00000583780 OCC1Q8TAD7 63 aa14.14□□□□□ -0.15
SHMT1-210ENST00000583780 IGKV2D-24A0A075B6R9 120 aa14.13□□□□□ -0.15
SHMT1-210ENST00000583780 K7EN84 100 aa14.13□□□□□ -0.15
SHMT1-210ENST00000583780 OR5AL1P0C617 328 aa14.13□□□□□ -0.15
SHMT1-210ENST00000583780 NIT1Q86X76 327 aa14.13□□□□□ -0.15
SHMT1-210ENST00000583780 RMI2Q96E14 147 aa14.13□□□□□ -0.15
SHMT1-210ENST00000583780 A0A087WWC5 75 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 XKRY2A2RUG3 117 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 MT1HL1P0DM35 61 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 C14orf178Q8N769 122 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-210ENST00000583780 FER1L6-AS1Q8NA97 138 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 NUDT10Q8NFP7 164 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 NUDT11Q96G61 164 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 SSBP4Q9BWG4 385 aaPredicted RBP14.12□□□□□ -0.15
SHMT1-210ENST00000583780 RNASE7Q9H1E1 156 aaKnown RBP14.12□□□□□ -0.15
SHMT1-210ENST00000583780 KLK12Q9UKR0 248 aa14.12□□□□□ -0.15
SHMT1-210ENST00000583780 RPL37AP61513 92 aaKnown RBP14.11□□□□□ -0.15
SHMT1-210ENST00000583780 ATRAIDQ6UW56 229 aa14.11□□□□□ -0.15
SHMT1-210ENST00000583780 SMIM7Q9BQ49 75 aa14.11□□□□□ -0.15
SHMT1-210ENST00000583780 SRP19P09132 144 aaKnown RBP14.1□□□□□ -0.15
SHMT1-210ENST00000583780 IGLC6P0CF74 106 aa14.09□□□□□ -0.15
SHMT1-210ENST00000583780 ZNF56Q15929 161 aa14.09□□□□□ -0.15
SHMT1-210ENST00000583780 RPP21Q9H633 154 aaKnown RBP14.09□□□□□ -0.15
SHMT1-210ENST00000583780 ZNF727A8MUV8 499 aa14.08□□□□□ -0.16
SHMT1-210ENST00000583780 NDUFS6O75380 124 aaKnown RBP14.08□□□□□ -0.16
SHMT1-210ENST00000583780 UBE2WQ96B02 151 aa14.08□□□□□ -0.16
SHMT1-210ENST00000583780 AP1S3Q96PC3 154 aa14.07□□□□□ -0.16
SHMT1-210ENST00000583780 URGCP-MRPS24S4R325 110 aa14.07□□□□□ -0.16
SHMT1-210ENST00000583780 LYZL1Q6UWQ5 148 aa14.06□□□□□ -0.16
SHMT1-210ENST00000583780 GATCO43716 136 aaKnown RBP14.05□□□□□ -0.16
SHMT1-210ENST00000583780 SMIM17P0DL12 118 aa14.05□□□□□ -0.16
SHMT1-210ENST00000583780 CACNG7P62955 275 aa14.05□□□□□ -0.16
SHMT1-210ENST00000583780 SRSF3P84103 164 aaKnown RBP14.05□□□□□ -0.16
SHMT1-210ENST00000583780 F5H697 171 aa14.04□□□□□ -0.16
SHMT1-210ENST00000583780 PEA15Q15121 130 aa14.04□□□□□ -0.16
SHMT1-210ENST00000583780 LRP2P98164 4655 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 C9JQL5 133 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 F2Z2F3 143 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 RAB4BP61018 213 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 ENHOQ6UWT2 76 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 LINC01551Q86U37 167 aa14.03□□□□□ -0.16
SHMT1-210ENST00000583780 MGPP08493 103 aa14.02□□□□□ -0.17
SHMT1-210ENST00000583780 FAM231DQ6ZW35 169 aa14.02□□□□□ -0.17
SHMT1-210ENST00000583780 CHCHD7Q9BUK0 85 aa14.02□□□□□ -0.17
SHMT1-210ENST00000583780 CTRLP40313 264 aa14.01□□□□□ -0.17
SHMT1-210ENST00000583780 RPL36AP83881 106 aaKnown RBP14.01□□□□□ -0.17
SHMT1-210ENST00000583780 ELOBQ15370 118 aa14.01□□□□□ -0.17
SHMT1-210ENST00000583780 C14orf177Q52M58 125 aa14.01□□□□□ -0.17
SHMT1-210ENST00000583780 RPL36ALQ969Q0 106 aaKnown RBP14.01□□□□□ -0.17
SHMT1-210ENST00000583780 A0A087WX48 190 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 TRBV10-1A0A0K0K1A3 114 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 NTF3P20783 257 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 RAB14P61106 215 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 Q0VG73 95 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 KIF25-AS1Q9Y6Z4 181 aa14□□□□□ -0.17
SHMT1-210ENST00000583780 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14□□□□□ -0.17
SHMT1-210ENST00000583780 A8MWL6 223 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 PANO1I0J062 215 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 TRGC1P0CF51 173 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 TMEM241Q24JQ0 296 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 FAM74A3Q4VXF1 159 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 GTSF1Q8WW33 167 aa13.99□□□□□ -0.17
SHMT1-210ENST00000583780 PRSS1P07477 247 aa13.98□□□□□ -0.17
SHMT1-210ENST00000583780 TWIST1Q15672 202 aa13.98□□□□□ -0.17
SHMT1-210ENST00000583780 C9orf163Q8N9P6 203 aa13.98□□□□□ -0.17
SHMT1-210ENST00000583780 NEXN-AS1Q8NBZ9 246 aa13.98□□□□□ -0.17
SHMT1-210ENST00000583780 TRBV7-3A0A075B6L6 115 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 ADIRFQ15847 76 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms