RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 UBE2D2P62837 147 aa12.56□□□□□ -0.4
CCDC40-213ENST00000574933 ESRGQ1W209 222 aa12.56□□□□□ -0.4
CCDC40-213ENST00000574933 AMN1Q8IY45 258 aa12.56□□□□□ -0.4
CCDC40-213ENST00000574933 LINC00476Q8WZB0 136 aa12.56□□□□□ -0.4
CCDC40-213ENST00000574933 GAGE12JA6NER3 117 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 GAGE1Q13065 139 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 GAGE4Q13068 117 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 GAGE5Q13069 117 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 GAGE13Q4V321 117 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 LYPD5Q6UWN5 251 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 ATP6V0E2Q8NHE4 81 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 ZNRF2Q8NHG8 242 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 MRAP2Q96G30 205 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 NIT2Q9NQR4 276 aa12.55□□□□□ -0.4
CCDC40-213ENST00000574933 CCL18P55774 89 aa12.54□□□□□ -0.4
CCDC40-213ENST00000574933 URGCP-MRPS24S4R325 110 aa12.54□□□□□ -0.4
CCDC40-213ENST00000574933 TRAV26-2A0A0B4J265 109 aa12.53□□□□□ -0.4
CCDC40-213ENST00000574933 MRPL51Q4U2R6 128 aaKnown RBP12.53□□□□□ -0.4
CCDC40-213ENST00000574933 GTSF1LQ9H1H1 148 aa12.53□□□□□ -0.4
CCDC40-213ENST00000574933 LINC00588Q9Y4M8 146 aa12.53□□□□□ -0.4
CCDC40-213ENST00000574933 LYSTQ99698 3801 aa12.52□□□□□ -0.4
CCDC40-213ENST00000574933 LCE6AA0A183 80 aa12.52□□□□□ -0.41
CCDC40-213ENST00000574933 COX19Q49B96 90 aa12.52□□□□□ -0.41
CCDC40-213ENST00000574933 UPK3BQ9BT76 320 aa12.52□□□□□ -0.41
CCDC40-213ENST00000574933 MRPS16Q9Y3D3 137 aaKnown RBP12.52□□□□□ -0.41
CCDC40-213ENST00000574933 TNFRSF18Q9Y5U5 241 aa12.52□□□□□ -0.41
CCDC40-213ENST00000574933 ALMS1Q8TCU4 4167 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 TRBV24-1A0A075B6N3 115 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 TRBV6-5A0A0K0K1A5 114 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 ELOBQ15370 118 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 TMEM136Q6ZRR5 245 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 YPEL4Q96NS1 127 aa12.51□□□□□ -0.41
CCDC40-213ENST00000574933 GAS8-AS1O95177 125 aa12.5□□□□□ -0.41
CCDC40-213ENST00000574933 PPP1R17O96001 155 aa12.5□□□□□ -0.41
CCDC40-213ENST00000574933 DAZ4Q86SG3 579 aaKnown RBP12.5□□□□□ -0.41
CCDC40-213ENST00000574933 RPL39LQ96EH5 51 aaKnown RBP12.5□□□□□ -0.41
CCDC40-213ENST00000574933 DAZ3Q9NR90 486 aaKnown RBP12.5□□□□□ -0.41
CCDC40-213ENST00000574933 PPBPP02775 128 aa12.49□□□□□ -0.41
CCDC40-213ENST00000574933 UBE2DNLQ8IWF7 75 aa12.49□□□□□ -0.41
CCDC40-213ENST00000574933 NRACQ8N912 160 aa12.49□□□□□ -0.41
CCDC40-213ENST00000574933 GNB1LQ9BYB4 327 aa12.49□□□□□ -0.41
CCDC40-213ENST00000574933 SMCO4Q9NRQ5 59 aa12.49□□□□□ -0.41
CCDC40-213ENST00000574933 LY6G6CO95867 125 aa12.48□□□□□ -0.41
CCDC40-213ENST00000574933 HLA-DQA1P01909 254 aa12.48□□□□□ -0.41
CCDC40-213ENST00000574933 RPS10P46783 165 aaKnown RBP12.48□□□□□ -0.41
CCDC40-213ENST00000574933 OR10J3Q5JRS4 329 aa12.48□□□□□ -0.41
CCDC40-213ENST00000574933 LELP1Q5T871 98 aa12.48□□□□□ -0.41
CCDC40-213ENST00000574933 VPS13DQ5THJ4 4388 aa12.48□□□□□ -0.41
CCDC40-213ENST00000574933 TGIF2-C20orf24A0A0A6YYL0 155 aa12.47□□□□□ -0.41
CCDC40-213ENST00000574933 TMEM97Q5BJF2 176 aa12.47□□□□□ -0.41
CCDC40-213ENST00000574933 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-213ENST00000574933 DNAH1Q9P2D7 4330 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 SMKR1H3BMG3 65 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 PHOX2AO14813 284 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 NCR2O95944 276 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 MT-ND6P03923 174 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 CKS2P33552 79 aa12.46□□□□□ -0.41
CCDC40-213ENST00000574933 POLR2KP53803 58 aaKnown RBP12.46□□□□□ -0.41
CCDC40-213ENST00000574933 SDHAF1A6NFY7 115 aa12.45□□□□□ -0.42
CCDC40-213ENST00000574933 D6R8Y8 96 aa12.45□□□□□ -0.42
CCDC40-213ENST00000574933 RPL32P62910 135 aaKnown RBP12.45□□□□□ -0.42
CCDC40-213ENST00000574933 CBLN2Q8IUK8 224 aa12.45□□□□□ -0.42
CCDC40-213ENST00000574933 ORMDL3Q8N138 153 aa12.45□□□□□ -0.42
CCDC40-213ENST00000574933 ST20Q9HBF5 79 aa12.45□□□□□ -0.42
CCDC40-213ENST00000574933 IGHV3-38A0A0C4DH36 116 aa12.44□□□□□ -0.42
CCDC40-213ENST00000574933 C20orf78Q9BR46 151 aa12.44□□□□□ -0.42
CCDC40-213ENST00000574933 TMEM70Q9BUB7 260 aa12.44□□□□□ -0.42
CCDC40-213ENST00000574933 LAMTOR2Q9Y2Q5 125 aa12.44□□□□□ -0.42
CCDC40-213ENST00000574933 TRBV6-8A0A0A6YYG3 113 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 TRBV27A0A0K0K1C4 114 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 TNFRSF6BO95407 300 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 S100A1P23297 94 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 SUMO2P61956 95 aaKnown RBP12.43□□□□□ -0.42
CCDC40-213ENST00000574933 NTM-AS1Q6ZSK4 140 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 Q9H8V8 135 aa12.43□□□□□ -0.42
CCDC40-213ENST00000574933 TRAV8-6A0A0B4J262 113 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 PRSS47A8MTI9 375 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 SIVA1O15304 175 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 ATP6V1G1O75348 118 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 APCSP02743 223 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 PRELID3AQ96N28 172 aa12.42□□□□□ -0.42
CCDC40-213ENST00000574933 I3L3M4 83 aa12.41□□□□□ -0.42
CCDC40-213ENST00000574933 NPYP01303 97 aa12.41□□□□□ -0.42
CCDC40-213ENST00000574933 IQCJQ1A5X6 159 aa12.41□□□□□ -0.42
CCDC40-213ENST00000574933 DNAH10OSP0CZ25 163 aa12.4□□□□□ -0.42
CCDC40-213ENST00000574933 COTL1Q14019 142 aa12.4□□□□□ -0.42
CCDC40-213ENST00000574933 WFDC10BQ8IUB3 73 aa12.4□□□□□ -0.42
CCDC40-213ENST00000574933 MRPL18Q9H0U6 180 aaKnown RBP12.4□□□□□ -0.42
CCDC40-213ENST00000574933 DNAH6Q9C0G6 4158 aa12.4□□□□□ -0.43
CCDC40-213ENST00000574933 VCYO14598 125 aa12.39□□□□□ -0.43
CCDC40-213ENST00000574933 TRBV25-1A0A075B6N4 114 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 IGHV1-24A0A0C4DH33 117 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 K7EP13 123 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 PMCHP20382 165 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 LINC01556Q5JQF7 62 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 SMIM2Q9BVW6 85 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 TRAPPC1Q9Y5R8 145 aa12.38□□□□□ -0.43
CCDC40-213ENST00000574933 KMT2CQ8NEZ4 4911 aaKnown RBP12.38□□□□□ -0.43
CCDC40-213ENST00000574933 KMT2AQ03164 3969 aa12.37□□□□□ -0.43
CCDC40-213ENST00000574933 TSHBP01222 138 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms