RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ARMS2P0C7Q2 107 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 DPH3Q96FX2 82 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 KRTAP9-2Q9BYQ4 174 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 SMDT1Q9H4I9 107 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 PHLDA3Q9Y5J5 127 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 TRBV10-1A0A0K0K1A3 114 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 PGPEP1LA6NFU8 196 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 F2Z2F3 143 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 GNG4P50150 75 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 WDR73Q6P4I2 378 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 Q8N3U1 123 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 SLC25A29Q8N8R3 303 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 SFRP2Q96HF1 295 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 PARLQ9H300 379 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 MED9Q9NWA0 146 aa7.18□□□□□ -1.26
VPS53-207ENST00000570510 A0A1B0GV50 99 aa7.17□□□□□ -1.26
VPS53-207ENST00000570510 UFSP1Q6NVU6 142 aa7.17□□□□□ -1.26
VPS53-207ENST00000570510 KCNIP4Q6PIL6 250 aa7.17□□□□□ -1.26
VPS53-207ENST00000570510 A0A087WWC5 75 aa7.16□□□□□ -1.26
VPS53-207ENST00000570510 C19orf71A6NCJ1 209 aa7.16□□□□□ -1.26
VPS53-207ENST00000570510 CENPWQ5EE01 88 aa7.16□□□□□ -1.26
VPS53-207ENST00000570510 ALKAL2Q6UX46 152 aa7.16□□□□□ -1.26
VPS53-207ENST00000570510 IGHV3-73A0A0B4J1V6 119 aa7.15□□□□□ -1.26
VPS53-207ENST00000570510 H3BVH4 76 aa7.15□□□□□ -1.26
VPS53-207ENST00000570510 M0R036 132 aa7.15□□□□□ -1.26
VPS53-207ENST00000570510 CACNG7P62955 275 aa7.15□□□□□ -1.26
VPS53-207ENST00000570510 UBE2WQ96B02 151 aa7.15□□□□□ -1.26
VPS53-207ENST00000570510 A0A1B0GVG6 124 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 P01737 135 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 RAB4BP61018 213 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 ELOBQ15370 118 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 FAM74A3Q4VXF1 159 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 CT83Q5H943 113 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 FAM231DQ6ZW35 169 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 OR10G8Q8NGN5 311 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 FAM210AQ96ND0 272 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 CNFNQ9BYD5 112 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 KLK12Q9UKR0 248 aa7.14□□□□□ -1.27
VPS53-207ENST00000570510 TNXBP22105 4242 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 A0A087WX48 190 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 IGLC6P0CF74 106 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 LINC00694P0DN24 101 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 TMEM97Q5BJF2 176 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 SPANXN1Q5VSR9 72 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 TEX261Q6UWH6 196 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.13□□□□□ -1.27
VPS53-207ENST00000570510 DERL1Q9BUN8 251 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 C1orf43Q9BWL3 253 aa7.13□□□□□ -1.27
VPS53-207ENST00000570510 TRBV20OR9-2A0A075B6H5 130 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 GRIFINA4D1Z8 144 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 FAM231BA6NCW3 169 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 PKIAP61925 76 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 PRR27Q6MZM9 219 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 FER1L6-AS1Q8NA97 138 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 OR2D3Q8NGH3 330 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 AP1S3Q96PC3 154 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 CHCHD7Q9BUK0 85 aa7.12□□□□□ -1.27
VPS53-207ENST00000570510 TRBV7-3A0A075B6L6 115 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 A0A0U1RQV1 116 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 KRTAP9-6A0A140TA67 174 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 RAB19A4D1S5 217 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 GAGE12JA6NER3 117 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 H7C1H1 209 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 M0R381 172 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 TRGC1P0CF51 173 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 SMIM17P0DL12 118 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 FOXA3P55318 350 aaPredicted RBP7.11□□□□□ -1.27
VPS53-207ENST00000570510 RPL36AP83881 106 aaKnown RBP7.11□□□□□ -1.27
VPS53-207ENST00000570510 Q0VG73 95 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 GAGE1Q13065 139 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 GAGE4Q13068 117 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 GAGE5Q13069 117 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 ODF1Q14990 250 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 GAGE13Q4V321 117 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 DGAT2L7PQ6IED9 249 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 RPL36ALQ969Q0 106 aaKnown RBP7.11□□□□□ -1.27
VPS53-207ENST00000570510 LINC01600Q96MT4 127 aa7.11□□□□□ -1.27
VPS53-207ENST00000570510 EIF5A2Q9GZV4 153 aaKnown RBP7.11□□□□□ -1.27
VPS53-207ENST00000570510 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.11□□□□□ -1.27
VPS53-207ENST00000570510 A8MWL6 223 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 CRPP02741 224 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 CTRLP40313 264 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 NKX2-5P52952 324 aaPredicted RBP7.1□□□□□ -1.27
VPS53-207ENST00000570510 NUDT10Q8NFP7 164 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 OR10AG1Q8NH19 301 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 OCC1Q8TAD7 63 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 C7orf33Q8WU49 177 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 NUDT11Q96G61 164 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 DNAJC30Q96LL9 226 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 GFRA4Q9GZZ7 299 aa7.1□□□□□ -1.27
VPS53-207ENST00000570510 RPP21Q9H633 154 aaKnown RBP7.1□□□□□ -1.27
VPS53-207ENST00000570510 TMSB15BA0A087X1C1 80 aa7.09□□□□□ -1.27
VPS53-207ENST00000570510 HLA-DQA1P01909 254 aa7.09□□□□□ -1.27
VPS53-207ENST00000570510 RPL19P84098 196 aaKnown RBP7.09□□□□□ -1.27
VPS53-207ENST00000570510 PEA15Q15121 130 aa7.09□□□□□ -1.27
VPS53-207ENST00000570510 NIT1Q86X76 327 aa7.09□□□□□ -1.27
VPS53-207ENST00000570510 SAMD10Q9BYL1 202 aa7.09□□□□□ -1.27
VPS53-207ENST00000570510 USP17L23D6RBM5 183 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 FAM74A4Q5TZK3 123 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 C9orf163Q8N9P6 203 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms