RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 IFNA1P01562 189 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 IGLV2-8P01709 118 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 UBE2D3P61077 147 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 UBE2D2P62837 147 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 ELOBQ15370 118 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 CENPWQ5EE01 88 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 PRR27Q6MZM9 219 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 ATRAIDQ6UW56 229 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 ZFP82Q8N141 532 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 CHAC1Q9BUX1 264 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 VAX2Q9UIW0 290 aa9.76□□□□□ -0.85
CLN3-236ENST00000568558 TRBV20OR9-2A0A075B6H5 130 aa9.75□□□□□ -0.85
CLN3-236ENST00000568558 KRTAP10-4P60372 401 aaPredicted RBP9.75□□□□□ -0.85
CLN3-236ENST00000568558 RPL36AP83881 106 aaKnown RBP9.75□□□□□ -0.85
CLN3-236ENST00000568558 RPL36ALQ969Q0 106 aaKnown RBP9.75□□□□□ -0.85
CLN3-236ENST00000568558 TRBV7-3A0A075B6L6 115 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 PDE6DO43924 150 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 KCNIP4Q6PIL6 250 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 LYPD6BQ8NI32 183 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 CIRBP-AS1Q8TBR5 109 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 MED9Q9NWA0 146 aa9.74□□□□□ -0.85
CLN3-236ENST00000568558 BLOC1S1P78537 153 aa9.73□□□□□ -0.85
CLN3-236ENST00000568558 Q0VG73 95 aa9.73□□□□□ -0.85
CLN3-236ENST00000568558 OR10G8Q8NGN5 311 aa9.73□□□□□ -0.85
CLN3-236ENST00000568558 HMCN2Q8NDA2 5059 aa9.73□□□□□ -0.85
CLN3-236ENST00000568558 C1orf43Q9BWL3 253 aa9.72□□□□□ -0.85
CLN3-236ENST00000568558 TRBV6-8A0A0A6YYG3 113 aa9.71□□□□□ -0.86
CLN3-236ENST00000568558 TMEM262E9PQX1 116 aa9.71□□□□□ -0.86
CLN3-236ENST00000568558 GNG4P50150 75 aa9.71□□□□□ -0.86
CLN3-236ENST00000568558 C14orf177Q52M58 125 aa9.71□□□□□ -0.86
CLN3-236ENST00000568558 ENHOQ6UWT2 76 aa9.71□□□□□ -0.86
CLN3-236ENST00000568558 CRPP02741 224 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 TAGLN2P37802 199 aaKnown RBP9.7□□□□□ -0.86
CLN3-236ENST00000568558 RAB4BP61018 213 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 ZNF56Q15929 161 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 MPV17L2Q567V2 206 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 NEXN-AS1Q8NBZ9 246 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 OR10AG1Q8NH19 301 aa9.7□□□□□ -0.86
CLN3-236ENST00000568558 MUC21A0A0G2JKD1 596 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 MUC21A0A140T8X8 626 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 C19orf71A6NCJ1 209 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 CXCL1P09341 107 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 GZMBP10144 247 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 C15orf54Q8N8G6 183 aa9.69□□□□□ -0.86
CLN3-236ENST00000568558 SNAI2O43623 268 aa9.68□□□□□ -0.86
CLN3-236ENST00000568558 SSBP4Q9BWG4 385 aaPredicted RBP9.68□□□□□ -0.86
CLN3-236ENST00000568558 K7EN84 100 aa9.67□□□□□ -0.86
CLN3-236ENST00000568558 OXTP01178 125 aa9.67□□□□□ -0.86
CLN3-236ENST00000568558 ANGP03950 147 aaKnown RBP9.67□□□□□ -0.86
CLN3-236ENST00000568558 SERTAD4-AS1Q5TG53 156 aa9.67□□□□□ -0.86
CLN3-236ENST00000568558 SMIM12Q96EX1 92 aa9.67□□□□□ -0.86
CLN3-236ENST00000568558 USP17L23D6RBM5 183 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 TMEM250H0YL14 139 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 HLA-DQA1P01909 254 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 SSTP61278 116 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 PKIAP61925 76 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 MIAQ16674 131 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 TEX261Q6UWH6 196 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.66□□□□□ -0.86
CLN3-236ENST00000568558 OR2D3Q8NGH3 330 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 OCC1Q8TAD7 63 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 FAM210AQ96ND0 272 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 CHCHD5Q9BSY4 110 aa9.66□□□□□ -0.86
CLN3-236ENST00000568558 OR5AL1P0C617 328 aa9.65□□□□□ -0.86
CLN3-236ENST00000568558 IGLC6P0CF74 106 aa9.65□□□□□ -0.86
CLN3-236ENST00000568558 CEBPGP53567 150 aa9.65□□□□□ -0.86
CLN3-236ENST00000568558 SPANXN1Q5VSR9 72 aa9.65□□□□□ -0.86
CLN3-236ENST00000568558 NTM-AS1Q6ZSK4 140 aa9.65□□□□□ -0.86
CLN3-236ENST00000568558 DAZAP1Q96EP5 407 aaKnown RBP9.65□□□□□ -0.86
CLN3-236ENST00000568558 EIF5A2Q9GZV4 153 aaKnown RBP9.65□□□□□ -0.86
CLN3-236ENST00000568558 P01737 135 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 PRSS1P07477 247 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 SRP19P09132 144 aaKnown RBP9.64□□□□□ -0.87
CLN3-236ENST00000568558 TMEM97Q5BJF2 176 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 NUDT10Q8NFP7 164 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 NUDT11Q96G61 164 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 TPPP3Q9BW30 176 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 RNASE7Q9H1E1 156 aaKnown RBP9.64□□□□□ -0.87
CLN3-236ENST00000568558 PRR34Q9NV39 138 aa9.64□□□□□ -0.87
CLN3-236ENST00000568558 F5H697 171 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 RPS20P60866 119 aaKnown RBP9.63□□□□□ -0.87
CLN3-236ENST00000568558 RPL37AP61513 92 aaKnown RBP9.63□□□□□ -0.87
CLN3-236ENST00000568558 DGAT2L7PQ6IED9 249 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 KRTAP26-1Q6PEX3 210 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 C9orf163Q8N9P6 203 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 FER1L6-AS1Q8NA97 138 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 KIF25-AS1Q9Y6Z4 181 aa9.63□□□□□ -0.87
CLN3-236ENST00000568558 C9JQL5 133 aa9.62□□□□□ -0.87
CLN3-236ENST00000568558 RBX1P62877 108 aa9.62□□□□□ -0.87
CLN3-236ENST00000568558 CLPSL2Q6UWE3 100 aa9.62□□□□□ -0.87
CLN3-236ENST00000568558 BIN3Q9NQY0 253 aa9.62□□□□□ -0.87
CLN3-236ENST00000568558 UBR4Q5T4S7 5183 aa9.61□□□□□ -0.87
CLN3-236ENST00000568558 TRBV25-1A0A075B6N4 114 aa9.61□□□□□ -0.87
CLN3-236ENST00000568558 SRSF3P84103 164 aaKnown RBP9.61□□□□□ -0.87
CLN3-236ENST00000568558 GAGE6Q13070 117 aa9.61□□□□□ -0.87
CLN3-236ENST00000568558 AP1S3Q96PC3 154 aa9.61□□□□□ -0.87
CLN3-236ENST00000568558 RPP21Q9H633 154 aaKnown RBP9.61□□□□□ -0.87
CLN3-236ENST00000568558 SMIM17P0DL12 118 aa9.6□□□□□ -0.87
CLN3-236ENST00000568558 HNRNPA3P51991 378 aaKnown RBP9.6□□□□□ -0.87
CLN3-236ENST00000568558 LYZL1Q6UWQ5 148 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms