RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	MIA	Q16674	131 aa		10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	MPV17L2	Q567V2	206 aa		10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	KCNRG	Q8N5I3	272 aa		10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	CHCHD5	Q9BSY4	110 aa		10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	SCO2	A0A1W2PP80	73 aa		10.96	□□□□□ -0.65
CLN3-231	ENST00000568422		F5H697	171 aa		10.96	□□□□□ -0.65
CLN3-231	ENST00000568422	FAM213B	Q8TBF2	198 aa		10.96	□□□□□ -0.65
CLN3-231	ENST00000568422	VAX2	Q9UIW0	290 aa		10.96	□□□□□ -0.65
CLN3-231	ENST00000568422	SMIM17	P0DL12	118 aa		10.95	□□□□□ -0.66
CLN3-231	ENST00000568422	KRTAP10-4	P60372	401 aa	Predicted RBP	10.95	□□□□□ -0.66
CLN3-231	ENST00000568422	DGAT2L7P	Q6IED9	249 aa		10.95	□□□□□ -0.66
CLN3-231	ENST00000568422	TMUB2	Q71RG4	321 aa		10.95	□□□□□ -0.66
CLN3-231	ENST00000568422	OXT	P01178	125 aa		10.94	□□□□□ -0.66
CLN3-231	ENST00000568422	AP1S3	Q96PC3	154 aa		10.94	□□□□□ -0.66
CLN3-231	ENST00000568422	PRR34	Q9NV39	138 aa		10.94	□□□□□ -0.66
CLN3-231	ENST00000568422		A0A0D9SG52	128 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	HMSD	A8MTL9	139 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	USP17L23	D6RBM5	183 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	HLA-DQA1	P01909	254 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	H2AFB1	P0C5Y9	115 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	EIF5A	P63241	154 aa	Known RBP	10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	SERTAD4-AS1	Q5TG53	156 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	KIF25-AS1	Q9Y6Z4	181 aa		10.93	□□□□□ -0.66
CLN3-231	ENST00000568422	TRBV25-1	A0A075B6N4	114 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	MUC21	A0A0G2JKD1	596 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	MUC21	A0A140T8X8	626 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422		A0A1B0GV50	99 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	KANTR	A0A1W2PQU2	76 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	SMLR1	H3BR10	107 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	NTM-AS1	Q6ZSK4	140 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	DERL1	Q9BUN8	251 aa		10.92	□□□□□ -0.66
CLN3-231	ENST00000568422	RPL35	P42766	123 aa	Known RBP	10.91	□□□□□ -0.66
CLN3-231	ENST00000568422	RBX1	P62877	108 aa		10.91	□□□□□ -0.66
CLN3-231	ENST00000568422		H7C1H1	209 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	BCL2L11	O43521	198 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	SST	P61278	116 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	IQCJ	Q1A5X6	159 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	AKAP14	Q86UN6	197 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	TCTE3	Q8IZS6	198 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	LINC00269	Q8N2A0	174 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	C9orf163	Q8N9P6	203 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	MANBAL	Q9NQG1	85 aa		10.9	□□□□□ -0.66
CLN3-231	ENST00000568422	IGHV1-24	A0A0C4DH33	117 aa		10.89	□□□□□ -0.67
CLN3-231	ENST00000568422	PRSS1	P07477	247 aa		10.89	□□□□□ -0.67
CLN3-231	ENST00000568422	RPS20	P60866	119 aa	Known RBP	10.89	□□□□□ -0.67
CLN3-231	ENST00000568422	CLRN3	Q8NCR9	226 aa		10.89	□□□□□ -0.67
CLN3-231	ENST00000568422	C11orf52	Q96A22	123 aa		10.89	□□□□□ -0.67
CLN3-231	ENST00000568422		M0QY20	66 aa		10.88	□□□□□ -0.67
CLN3-231	ENST00000568422	GAGE6	Q13070	117 aa		10.88	□□□□□ -0.67
CLN3-231	ENST00000568422	DAZAP1	Q96EP5	407 aa	Known RBP	10.88	□□□□□ -0.67
CLN3-231	ENST00000568422	SMIM12	Q96EX1	92 aa		10.88	□□□□□ -0.67
CLN3-231	ENST00000568422	LRP1	Q07954	4544 aa	Known RBP	10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	IGLC6	P0CF74	106 aa		10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	RPL37A	P61513	92 aa	Known RBP	10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	CACNG7	P62955	275 aa		10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	KRTAP26-1	Q6PEX3	210 aa		10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	FER1L6-AS1	Q8NA97	138 aa		10.87	□□□□□ -0.67
CLN3-231	ENST00000568422	TRAV8-4	A0A0B4J246	113 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	TRAV1-1	A0A0B4J248	108 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	XKRY2	A2RUG3	117 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422		F2Z2F3	143 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	TEX46	H3BTG2	121 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422		P01737	135 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	REG3A	Q06141	175 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	CLPSL2	Q6UWE3	100 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	TPPP3	Q9BW30	176 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422	GNG13	Q9P2W3	67 aa		10.86	□□□□□ -0.67
CLN3-231	ENST00000568422		A0A1B0GUV1	79 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	MGP	P08493	103 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	RAB5C	P51148	216 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	CENPW	Q5EE01	88 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	SUMO4	Q6EEV6	95 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	OR2D3	Q8NGH3	330 aa		10.85	□□□□□ -0.67
CLN3-231	ENST00000568422	C19orf71	A6NCJ1	209 aa		10.84	□□□□□ -0.67
CLN3-231	ENST00000568422	CCL20	P78556	96 aa		10.84	□□□□□ -0.67
CLN3-231	ENST00000568422	SDIM1	Q6ZPB5	146 aa		10.84	□□□□□ -0.67
CLN3-231	ENST00000568422	BIN3	Q9NQY0	253 aa		10.84	□□□□□ -0.67
CLN3-231	ENST00000568422	TRGC1	P0CF51	173 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	GZMB	P10144	247 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	GNG4	P50150	75 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	CNBP	P62633	177 aa	Known RBP	10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	EIF5AL1	Q6IS14	154 aa	Known RBP	10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	RASL11A	Q6T310	242 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	PGLYRP4	Q96LB8	373 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	TMEM243	Q9BU79	118 aa		10.83	□□□□□ -0.68
CLN3-231	ENST00000568422	PDE6D	O43924	150 aa		10.82	□□□□□ -0.68
CLN3-231	ENST00000568422	NKX2-5	P52952	324 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN3-231	ENST00000568422	NIT2	Q9NQR4	276 aa		10.82	□□□□□ -0.68
CLN3-231	ENST00000568422	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	10.82	□□□□□ -0.68
CLN3-231	ENST00000568422	FAT3	Q8TDW7	4589 aa		10.82	□□□□□ -0.68
CLN3-231	ENST00000568422	IGLV10-54	A0A075B6I4	117 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	hDV102S1	A0JD36	115 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	IFNA1	P01562	189 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	MEF2B	Q02080	365 aa	Predicted RBP	10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	WDR73	Q6P4I2	378 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	C20orf203	Q8NBC4	194 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	DPH3P1	Q9H4G8	78 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	HMCN2	Q8NDA2	5059 aa		10.81	□□□□□ -0.68
CLN3-231	ENST00000568422	RAB19	A4D1S5	217 aa		10.8	□□□□□ -0.68

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