RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 TRAV9-2A0A087WT02 112 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 IGHV1-24A0A0C4DH33 117 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 MUC21A0A0G2JKD1 596 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 MUC21A0A140T8X8 626 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 LOC389332A0A1B0GUA5 103 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 C2orf70A6NJV1 201 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 HSBP1L1C9JCN9 74 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 SYS1-DBNDD2H3BUS1 97 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 K7EIL1 84 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 SNAI2O43623 268 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 TSPOP30536 169 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 ASIPP42127 132 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 RPL36AP83881 106 aaKnown RBP4.36□□□□□ -1.71
VPS39-209ENST00000568029 SPATA45Q537H7 98 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 MUC21Q5SSG8 566 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 EBLN2Q6P2I7 272 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 ZNF705AQ6ZN79 300 aaPredicted RBP4.36□□□□□ -1.71
VPS39-209ENST00000568029 C18orf65Q6ZTR6 163 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 MRPL52Q86TS9 123 aaKnown RBP4.36□□□□□ -1.71
VPS39-209ENST00000568029 APRG1Q8IVJ8 170 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 ZFAND2AQ8N6M9 145 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 Q8N976 141 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 C14orf144Q96I85 54 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 FAM19A4Q96LR4 140 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 ODF3Q96PU9 254 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 MS4A6AQ9H2W1 248 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 NXT2Q9NPJ8 142 aaKnown RBP4.36□□□□□ -1.71
VPS39-209ENST00000568029 SIGLEC8Q9NYZ4 499 aa4.36□□□□□ -1.71
VPS39-209ENST00000568029 A0A087WW49 117 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 LINC01619G3V211 115 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 M0R143 59 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 CRXO43186 299 aaPredicted RBP4.35□□□□□ -1.71
VPS39-209ENST00000568029 IFI27P40305 119 aaPredicted RBP4.35□□□□□ -1.71
VPS39-209ENST00000568029 SYNJ2BPP57105 145 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 TDRG1Q3Y452 100 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 C10orf99Q6UWK7 81 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 FAM159AQ6UWV7 190 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 DCANP1Q8TF63 244 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 MRAP2Q96G30 205 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 RNF185Q96GF1 192 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 UQCR10Q9UDW1 63 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 PHLDA3Q9Y5J5 127 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 WNK2Q9Y3S1 2297 aa4.35□□□□□ -1.71
VPS39-209ENST00000568029 TRAV2A0A0B4J234 112 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 A0A0J9YX75 114 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 OR4C46A6NHA9 309 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 H3BVH4 76 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 K7EQG2 157 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 PPP1R17O96001 155 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 HBDP02042 147 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 TFPI2P48307 235 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 TCTEX1D4Q5JR98 221 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 PSMG4Q5JS54 123 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 SPATA12Q7Z6I5 190 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 OR1N2Q8NGR9 330 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 OR2K2Q8NGT1 345 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 LINC01006Q8NI28 216 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 C4orf3Q8WVX3 66 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 C2orf88Q9BSF0 95 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 ST20Q9HBF5 79 aa4.34□□□□□ -1.71
VPS39-209ENST00000568029 TIMM8BQ9Y5J9 83 aaPredicted RBP4.34□□□□□ -1.71
VPS39-209ENST00000568029 C7orf71A4D174 169 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 LINC01546A6NGU7 62 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 KLLNB2CW77 178 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 F6UB75 175 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 SMKR1H3BMG3 65 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 NCR2O95944 276 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 NPYP01303 97 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 ZNF688P0C7X2 276 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 SMIM17P0DL12 118 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 IGLC3P0DOY3 106 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 EVI2AP22794 236 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 FCER1GP30273 86 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 PRR9Q5T870 116 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 LINC01545Q5VT33 79 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 FOXI2Q6ZQN5 318 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 Q8N8P6 123 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 DNAH10Q8IVF4 4471 aa4.33□□□□□ -1.72
VPS39-209ENST00000568029 STAB2Q8WWQ8 2551 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 TRAV12-3A0A0B4J271 114 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 LCE6AA0A183 80 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 K7EMI3 77 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 M0R381 172 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 GNRH2O43555 120 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 NDUFA7O95182 113 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 G0S2P27469 103 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 HNRNPA3P51991 378 aaKnown RBP4.32□□□□□ -1.72
VPS39-209ENST00000568029 DEFB1P60022 68 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 LGALS9BQ3B8N2 356 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 LGALS9CQ6DKI2 356 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 Q6ZN92 141 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 LINC00173Q6ZV60 143 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 SMIM29Q86T20 159 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 ATOH7Q8N100 152 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 DEFB125Q8N687 156 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 OR11H1Q8NG94 326 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 OR9G4Q8NGQ1 327 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 DYNLRB2Q8TF09 96 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 IFI27L1Q96BM0 104 aa4.32□□□□□ -1.72
VPS39-209ENST00000568029 AP1S3Q96PC3 154 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms