RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ZNF815PA8K554 130 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 CHD6Q8TD26 2715 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 MYMXA0A1B0GTQ4 84 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 C11orf86A6NJI1 115 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 KNCNA6PVL3 124 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 KLLNB2CW77 178 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 CRYGDP07320 174 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 C12orf74Q32Q52 190 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 KHDC1LQ5JSQ8 128 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 FOXI2Q6ZQN5 318 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 KIF25-AS1Q9Y6Z4 181 aa10.03□□□□□ -0.8
CLK3-215ENST00000564353 LGALS1P09382 135 aaKnown RBP10.02□□□□□ -0.8
CLK3-215ENST00000564353 P0DMU3 169 aa10.02□□□□□ -0.8
CLK3-215ENST00000564353 FAM231AP0DMU4 169 aa10.02□□□□□ -0.8
CLK3-215ENST00000564353 FAM231CP0DMU5 169 aa10.02□□□□□ -0.8
CLK3-215ENST00000564353 TMEM170BQ5T4T1 132 aa10.02□□□□□ -0.8
CLK3-215ENST00000564353 HIGD1BQ9P298 99 aa10.02□□□□□ -0.8
CLK3-215ENST00000564353 A4D1N5 150 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 PROK1P58294 105 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 KRTAP10-9P60411 292 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 ZFP2Q6ZN57 461 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 IGLL5B9A064 214 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 PPDPFQ9H3Y8 114 aa10.02□□□□□ -0.81
CLK3-215ENST00000564353 UBR5O95071 2799 aaPredicted RBP10.01□□□□□ -0.81
CLK3-215ENST00000564353 SRSF9Q13242 221 aaKnown RBP eCLIP10.01□□□□□ -0.81
CLK3-215ENST00000564353 C11orf44Q8N8P7 122 aa10.01□□□□□ -0.81
CLK3-215ENST00000564353 H3BUA1 57 aa10.01□□□□□ -0.81
CLK3-215ENST00000564353 SLURP1P55000 103 aa10.01□□□□□ -0.81
CLK3-215ENST00000564353 TM2D2Q9BX73 214 aa10.01□□□□□ -0.81
CLK3-215ENST00000564353 Q9UF83 564 aa10.01□□□□□ -0.81
CLK3-215ENST00000564353 APOMO95445 188 aa10□□□□□ -0.81
CLK3-215ENST00000564353 HOXD3P31249 432 aaPredicted RBP10□□□□□ -0.81
CLK3-215ENST00000564353 RNASE13Q5GAN3 156 aaKnown RBP10□□□□□ -0.81
CLK3-215ENST00000564353 HOXA3O43365 443 aaPredicted RBP10□□□□□ -0.81
CLK3-215ENST00000564353 SNRPD3P62318 126 aaKnown RBP10□□□□□ -0.81
CLK3-215ENST00000564353 SYT8Q8NBV8 401 aa10□□□□□ -0.81
CLK3-215ENST00000564353 KIR2DL4Q99706 377 aa10□□□□□ -0.81
CLK3-215ENST00000564353 TRAV12-1A0A0B4J245 112 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 A0A0J9YX75 114 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 ZNF876PQ49A33 203 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 NACAE9PAV3 2078 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 IGHV3-16A0A0C4DH30 117 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 TSPEAR-AS2P59090 65 aa9.99□□□□□ -0.81
CLK3-215ENST00000564353 MORN3Q6PF18 240 aaPredicted RBP9.99□□□□□ -0.81
CLK3-215ENST00000564353 PRRC2AP48634 2157 aaKnown RBP9.99□□□□□ -0.81
CLK3-215ENST00000564353 IGLV4-69A0A075B6H9 119 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 TRBV7-3A0A075B6L6 115 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 RBMY1A1P0DJD3 496 aaKnown RBP9.98□□□□□ -0.81
CLK3-215ENST00000564353 RBMY1CP0DJD4 496 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 RBMY1FQ15415 496 aaKnown RBP9.98□□□□□ -0.81
CLK3-215ENST00000564353 CEMP1Q6PRD7 247 aaPredicted RBP9.98□□□□□ -0.81
CLK3-215ENST00000564353 APRG1Q8IVJ8 170 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 ZNF580Q9UK33 172 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 ZNRF2Q8NHG8 242 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 VPREB3Q9UKI3 123 aa9.98□□□□□ -0.81
CLK3-215ENST00000564353 POLR2KP53803 58 aaKnown RBP9.97□□□□□ -0.81
CLK3-215ENST00000564353 XGP55808 180 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 LINC01356Q8N9X3 169 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 C2CD3Q4AC94 2353 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 IGIPA6NJ69 53 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 CCDC179H3BU77 68 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 DEFB131AP59861 70 aa9.97□□□□□ -0.81
CLK3-215ENST00000564353 IGHV1OR15-1A0A075B7D0 117 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 LOC107984156A0A0G2JMH3 177 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 LINC01549A6NIU2 74 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 ADARB2-AS1A8MUL3 147 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 E9PLD3 99 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 K7EMT4 169 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 K7EQG2 157 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 VCYO14598 125 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 ARL17AQ8IVW1 177 aa9.96□□□□□ -0.81
CLK3-215ENST00000564353 CDIP1Q9H305 208 aa9.96□□□□□ -0.82
CLK3-215ENST00000564353 JMJD1CQ15652 2540 aa9.95□□□□□ -0.82
CLK3-215ENST00000564353 M0QY20 66 aa9.95□□□□□ -0.82
CLK3-215ENST00000564353 PMVKQ15126 192 aa9.95□□□□□ -0.82
CLK3-215ENST00000564353 Q6ZUT4 128 aa9.95□□□□□ -0.82
CLK3-215ENST00000564353 TRBV20-1A0A075B6N2 111 aa9.94□□□□□ -0.82
CLK3-215ENST00000564353 NXPH4O95158 308 aa9.94□□□□□ -0.82
CLK3-215ENST00000564353 MED14OSP0DP75 135 aa9.94□□□□□ -0.82
CLK3-215ENST00000564353 ZNF843Q8N446 348 aa9.94□□□□□ -0.82
CLK3-215ENST00000564353 RAX2Q96IS3 184 aa9.94□□□□□ -0.82
CLK3-215ENST00000564353 APCP25054 2843 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 H7C2G1 150 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 RRN3P1Q2M238 152 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 C9orf85Q96MD7 179 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 ZNF702PQ9H963 129 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 IGHV3OR16-12A0A075B7B8 117 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 IGHV3-38A0A0C4DH36 116 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 A0A1W2PRX2 142 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 COX6B1P14854 86 aa9.93□□□□□ -0.82
CLK3-215ENST00000564353 NHLRC4P0CG21 123 aaPredicted RBP9.92□□□□□ -0.82
CLK3-215ENST00000564353 FHL3Q13643 280 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 C3orf56Q8N813 242 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 VCX2Q9H322 139 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 TENM4Q6N022 2769 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 ACANP16112 2415 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 A0A0J9YXV3 536 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 F8W1H4 67 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 PPP1R17O96001 155 aa9.92□□□□□ -0.82
CLK3-215ENST00000564353 A0A1B0GWB2 263 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms