RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CT83Q5H943 113 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 WDFY3Q8IZQ1 3526 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 FAM231BA6NCW3 169 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 SS18Q15532 418 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 SPATA45Q537H7 98 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 AMTNQ6UX39 209 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 COL27A1Q8IZC6 1860 aaPredicted RBP6.87□□□□□ -1.31
VPS39-205ENST00000562258 P0DMU3 169 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 FAM231AP0DMU4 169 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 FAM231CP0DMU5 169 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 NPC2P61916 151 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 DCANP1Q8TF63 244 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 VPS25Q9BRG1 176 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 CHTOPQ9Y3Y2 248 aaKnown RBP6.87□□□□□ -1.31
VPS39-205ENST00000562258 TENM4Q6N022 2769 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 A0A096LNT2 108 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 XCL1P47992 114 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 LINC00158P58513 81 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 KLK5Q9Y337 293 aaPredicted RBP6.86□□□□□ -1.31
VPS39-205ENST00000562258 ICOSQ9Y6W8 199 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 ERASQ7Z444 233 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 KRTAP1-3Q8IUG1 177 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 NF1P21359 2839 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 TRAV9-2A0A087WT02 112 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 NDUFS6O75380 124 aaKnown RBP6.86□□□□□ -1.31
VPS39-205ENST00000562258 MRGPRG-AS1Q2M3A8 158 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 RNF152Q8N8N0 203 aa6.86□□□□□ -1.31
VPS39-205ENST00000562258 IGHV4-28A0A0C4DH34 117 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 C5orf52A6NGY3 159 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 CIDEAO60543 219 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 ZNF479Q96JC4 524 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 IGLV2-18A0A075B6J9 118 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 ZNF561-AS1K7EIQ3 104 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 GTSF1Q8WW33 167 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 PRO0255Q9UI72 69 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 ZNF747Q9BV97 191 aa6.85□□□□□ -1.31
VPS39-205ENST00000562258 UBE2CO00762 179 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 SUMO4Q6EEV6 95 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 ZFAND2AQ8N6M9 145 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 RAB37Q96AX2 223 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 SMIM2Q9BVW6 85 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 KLK12Q9UKR0 248 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 LYPD6BQ8NI32 183 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 SMIM27A0A1W2PRY6 76 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 DPM2O94777 84 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 SFTA2Q6UW10 78 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 C5orf38Q86SI9 138 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 C18orf32Q8TCD1 76 aa6.84□□□□□ -1.31
VPS39-205ENST00000562258 LOC107984156A0A0G2JMH3 177 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 A0A0J9YWU9 116 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 NANOS2P60321 138 aaKnown RBP6.83□□□□□ -1.32
VPS39-205ENST00000562258 LINC01559Q495D7 138 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 ARL17AQ8IVW1 177 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 VSIG2Q96IQ7 327 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 M0R2N4 97 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 PCP4P48539 62 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 SLC25A34Q6PIV7 304 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 HIST1H2BLQ99880 126 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 IGHV1-24A0A0C4DH33 117 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 K7EQD1 137 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 CRIP2P52943 208 aaPredicted RBP6.83□□□□□ -1.32
VPS39-205ENST00000562258 CTAG1AP78358 180 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 DNLZQ5SXM8 178 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 C1orf43Q9BWL3 253 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 APOMO95445 188 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 FSHBP01225 129 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 PFN2P35080 140 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 PYY3Q5JQD4 70 aa6.83□□□□□ -1.32
VPS39-205ENST00000562258 NXPH4O95158 308 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 ZC2HC1BQ5TFG8 222 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 PRIMA1Q86XR5 153 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 TEX48A0A1B0GUV7 120 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 PRR9Q5T870 116 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 TRBV7-3A0A075B6L6 115 aa6.82□□□□□ -1.32
VPS39-205ENST00000562258 CHCHD1Q96BP2 118 aaKnown RBP6.82□□□□□ -1.32
VPS39-205ENST00000562258 ASH1LQ9NR48 2969 aaKnown RBP6.82□□□□□ -1.32
VPS39-205ENST00000562258 TRAV2A0A0B4J234 112 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 KMT2BQ9UMN6 2715 aaPredicted RBP6.81□□□□□ -1.32
VPS39-205ENST00000562258 A6NDN8 102 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 IGKCP01834 107 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 MIFP14174 115 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 HIST3H2BBQ8N257 126 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 NDUFAF3Q9BU61 184 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 DCHS2Q6V1P9 2916 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 ZNF815PA8K554 130 aa6.81□□□□□ -1.32
VPS39-205ENST00000562258 LY6G6CO95867 125 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 CRIP1P50238 77 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 Q8N8P6 123 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 RNF183Q96D59 192 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 CHAC1Q9BUX1 264 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 SEC11AP67812 179 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 C20orf144Q9BQM9 153 aa6.8□□□□□ -1.32
VPS39-205ENST00000562258 RPL39P62891 51 aaKnown RBP6.8□□□□□ -1.32
VPS39-205ENST00000562258 EREGO14944 169 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 KRTAP1-1Q07627 177 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 Q8N2B8 174 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 STPG4Q8N801 248 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 TRBV7-9A0A0J9YWB2 115 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 C3orf79P0CE67 100 aa6.79□□□□□ -1.32
VPS39-205ENST00000562258 IL17DQ8TAD2 202 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms