RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 Q6ZSA8 131 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 NTM-AS1Q6ZSK4 140 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 OR2D3Q8NGH3 330 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 DAZAP1Q96EP5 407 aaKnown RBP6.7□□□□□ -1.34
LDLR-214ENST00000560628 MANBALQ9NQG1 85 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 KIF25-AS1Q9Y6Z4 181 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 TRAV1-1A0A0B4J248 108 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 IGLV2-8P01709 118 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 ANGP03950 147 aaKnown RBP6.69□□□□□ -1.34
LDLR-214ENST00000560628 MGPP08493 103 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 ATRAIDQ6UW56 229 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.69□□□□□ -1.34
LDLR-214ENST00000560628 C11orf52Q96A22 123 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 C1orf43Q9BWL3 253 aa6.69□□□□□ -1.34
LDLR-214ENST00000560628 TEX46H3BTG2 121 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 CRPP02741 224 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 RAB5CP51148 216 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 GAGE6Q13070 117 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 EIF5AL1Q6IS14 154 aaKnown RBP6.68□□□□□ -1.34
LDLR-214ENST00000560628 LINC00528Q8N1L1 170 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 FER1L6-AS1Q8NA97 138 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 AP1S3Q96PC3 154 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 MED9Q9NWA0 146 aa6.68□□□□□ -1.34
LDLR-214ENST00000560628 VPS13BQ7Z7G8 4022 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 C19orf71A6NCJ1 209 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 PLA2G1BP04054 148 aaKnown RBP6.67□□□□□ -1.34
LDLR-214ENST00000560628 IGLC6P0CF74 106 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 GNG4P50150 75 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 SULT1A2P50226 295 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 RPS20P60866 119 aaKnown RBP6.67□□□□□ -1.34
LDLR-214ENST00000560628 RBX1P62877 108 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 CLPSL2Q6UWE3 100 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 SCXQ7RTU7 201 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 DEFB104AQ8WTQ1 72 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 VAX2Q9UIW0 290 aa6.67□□□□□ -1.34
LDLR-214ENST00000560628 M0QY20 66 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 MEF2BQ02080 365 aaPredicted RBP6.66□□□□□ -1.34
LDLR-214ENST00000560628 TMEM97Q5BJF2 176 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 SUMO4Q6EEV6 95 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 LYZL1Q6UWQ5 148 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 LINC00269Q8N2A0 174 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 CHAC1Q9BUX1 264 aa6.66□□□□□ -1.34
LDLR-214ENST00000560628 TRBV20OR9-2A0A075B6H5 130 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 TRBV25-1A0A075B6N4 114 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 USP17L23D6RBM5 183 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 J3QL48 77 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 PDE6DO43924 150 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 IFNA1P01562 189 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 P01737 135 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 HLA-DQA1P01909 254 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 NKX2-5P52952 324 aaPredicted RBP6.65□□□□□ -1.34
LDLR-214ENST00000560628 PKIAP61925 76 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 CACNG7P62955 275 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 MIAQ16674 131 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 C14orf177Q52M58 125 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 CIRBP-AS1Q8TBR5 109 aa6.65□□□□□ -1.34
LDLR-214ENST00000560628 SRRM2Q9UQ35 2752 aaKnown RBP6.65□□□□□ -1.35
LDLR-214ENST00000560628 DMBT1Q9UGM3 2413 aaPredicted RBP6.64□□□□□ -1.35
LDLR-214ENST00000560628 IGHV1-24A0A0C4DH33 117 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 XKRY2A2RUG3 117 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 F2Z2F3 143 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 H7C1H1 209 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 BCL2P10415 239 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 NTF3P20783 257 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 IQCJQ1A5X6 159 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 TCTE3Q8IZS6 198 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 NUDT10Q8NFP7 164 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 NUDT11Q96G61 164 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 DNAH8Q96JB1 4490 aa6.64□□□□□ -1.35
LDLR-214ENST00000560628 IGLV10-54A0A075B6I4 117 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 PRSS1P07477 247 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 KRTAP26-1Q6PEX3 210 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 RASL11AQ6T310 242 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 SLC51BQ86UW2 128 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 C9orf62Q8N4C0 152 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 SMIM12Q96EX1 92 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 BIN3Q9NQY0 253 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 PRR34Q9NV39 138 aa6.63□□□□□ -1.35
LDLR-214ENST00000560628 TRGC1P0CF51 173 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 TWIST1Q15672 202 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 OCC1Q8TAD7 63 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 TMEM243Q9BU79 118 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 RNASE7Q9H1E1 156 aaKnown RBP6.62□□□□□ -1.35
LDLR-214ENST00000560628 DPH3P1Q9H4G8 78 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 NIT2Q9NQR4 276 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 HERC1Q15751 4861 aa6.62□□□□□ -1.35
LDLR-214ENST00000560628 IGLV4-60A0A075B6I1 120 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 K7EN84 100 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 REG3AQ06141 175 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 WDR73Q6P4I2 378 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 C20orf203Q8NBC4 194 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 GFRA4Q9GZZ7 299 aa6.61□□□□□ -1.35
LDLR-214ENST00000560628 TRAV26-2A0A0B4J265 109 aa6.6□□□□□ -1.35
LDLR-214ENST00000560628 FOXA3P55318 350 aaPredicted RBP6.6□□□□□ -1.35
LDLR-214ENST00000560628 DGAT2L7PQ6IED9 249 aa6.6□□□□□ -1.35
LDLR-214ENST00000560628 RPP21Q9H633 154 aaKnown RBP6.6□□□□□ -1.35
LDLR-214ENST00000560628 A0A1B0GUV1 79 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 UBE2L6O14933 153 aa6.59□□□□□ -1.35
LDLR-214ENST00000560628 TAGLN2P37802 199 aaKnown RBP6.59□□□□□ -1.35
LDLR-214ENST00000560628 CTRLP40313 264 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms