RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 AMN1Q8IY45 258 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 GATD1Q8NB37 220 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 ATP6V0E2Q8NHE4 81 aa14.96□□□□□ -0.01
SNX1-210ENST00000560260 RPL36AP83881 106 aaKnown RBP14.95□□□□□ -0.02
SNX1-210ENST00000560260 SH2D6Q7Z4S9 175 aa14.95□□□□□ -0.02
SNX1-210ENST00000560260 RPL36ALQ969Q0 106 aaKnown RBP14.95□□□□□ -0.02
SNX1-210ENST00000560260 DNAH2Q9P225 4427 aa14.95□□□□□ -0.02
SNX1-210ENST00000560260 A0A087WWC5 75 aa14.94□□□□□ -0.02
SNX1-210ENST00000560260 GAS8-AS1O95177 125 aa14.94□□□□□ -0.02
SNX1-210ENST00000560260 HBBP68871 147 aa14.94□□□□□ -0.02
SNX1-210ENST00000560260 TRBV7-3A0A075B6L6 115 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 RAB4AP20338 218 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 TIRAPP58753 221 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 NDUFA5Q16718 116 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 RASL11AQ6T310 242 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 ATP5L2Q7Z4Y8 100 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 IMMP2LQ96T52 175 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 UPK3BQ9BT76 320 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 RPS10P5Q9NQ39 176 aa14.93□□□□□ -0.02
SNX1-210ENST00000560260 A0A1B0GW15 77 aa14.92□□□□□ -0.02
SNX1-210ENST00000560260 H7C1H1 209 aa14.92□□□□□ -0.02
SNX1-210ENST00000560260 SVBPQ8N300 66 aa14.92□□□□□ -0.02
SNX1-210ENST00000560260 RPL39LQ96EH5 51 aaKnown RBP14.92□□□□□ -0.02
SNX1-210ENST00000560260 GTSF1LQ9H1H1 148 aa14.92□□□□□ -0.02
SNX1-210ENST00000560260 TMEM242Q9NWH2 141 aa14.92□□□□□ -0.02
SNX1-210ENST00000560260 DNAH10Q8IVF4 4471 aa14.91□□□□□ -0.02
SNX1-210ENST00000560260 IGLV2-18A0A075B6J9 118 aa14.91□□□□□ -0.02
SNX1-210ENST00000560260 IGHV3-38A0A0C4DH36 116 aa14.91□□□□□ -0.02
SNX1-210ENST00000560260 FAM104BQ5XKR9 115 aa14.91□□□□□ -0.02
SNX1-210ENST00000560260 ATRAIDQ6UW56 229 aa14.91□□□□□ -0.02
SNX1-210ENST00000560260 SMKR1H3BMG3 65 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 SNAPINO95295 136 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 NCR2O95944 276 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 WFDC10BQ8IUB3 73 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 BTF3L4Q96K17 158 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 DNAJC30Q96LL9 226 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 NIT2Q9NQR4 276 aa14.9□□□□□ -0.02
SNX1-210ENST00000560260 RPS10P46783 165 aaKnown RBP14.89□□□□□ -0.03
SNX1-210ENST00000560260 MRPL51Q4U2R6 128 aaKnown RBP14.89□□□□□ -0.03
SNX1-210ENST00000560260 URGCP-MRPS24S4R325 110 aa14.89□□□□□ -0.03
SNX1-210ENST00000560260 S100A8P05109 93 aa14.88□□□□□ -0.03
SNX1-210ENST00000560260 LELP1Q5T871 98 aa14.88□□□□□ -0.03
SNX1-210ENST00000560260 KCNIP4Q6PIL6 250 aa14.88□□□□□ -0.03
SNX1-210ENST00000560260 Q9H8V8 135 aa14.88□□□□□ -0.03
SNX1-210ENST00000560260 TNFRSF18Q9Y5U5 241 aa14.88□□□□□ -0.03
SNX1-210ENST00000560260 MRAP2Q96G30 205 aa14.87□□□□□ -0.03
SNX1-210ENST00000560260 FRZBQ92765 325 aa14.86□□□□□ -0.03
SNX1-210ENST00000560260 TRAV9-1A0A075B6T8 112 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 M0R2N4 97 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 OR10J3Q5JRS4 329 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 NTM-AS1Q6ZSK4 140 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 NRACQ8N912 160 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 KRTAP1-5Q9BYS1 174 aa14.85□□□□□ -0.03
SNX1-210ENST00000560260 SIVA1O15304 175 aa14.84□□□□□ -0.03
SNX1-210ENST00000560260 S100PP25815 95 aa14.84□□□□□ -0.03
SNX1-210ENST00000560260 Q6ZR54 194 aa14.84□□□□□ -0.03
SNX1-210ENST00000560260 DAZ4Q86SG3 579 aaKnown RBP14.84□□□□□ -0.03
SNX1-210ENST00000560260 DEFB104AQ8WTQ1 72 aa14.84□□□□□ -0.03
SNX1-210ENST00000560260 DAZ3Q9NR90 486 aaKnown RBP14.84□□□□□ -0.03
SNX1-210ENST00000560260 TRBV6-5A0A0K0K1A5 114 aa14.83□□□□□ -0.04
SNX1-210ENST00000560260 TMEM136Q6ZRR5 245 aa14.83□□□□□ -0.04
SNX1-210ENST00000560260 DNAH17Q9UFH2 4485 aa14.82□□□□□ -0.04
SNX1-210ENST00000560260 NBDYA0A0U1RRE5 68 aa14.82□□□□□ -0.04
SNX1-210ENST00000560260 Q8N3U1 123 aa14.82□□□□□ -0.04
SNX1-210ENST00000560260 TRBV6-8A0A0A6YYG3 113 aa14.81□□□□□ -0.04
SNX1-210ENST00000560260 D6R8Y8 96 aa14.81□□□□□ -0.04
SNX1-210ENST00000560260 FRAS1Q86XX4 4008 aa14.81□□□□□ -0.04
SNX1-210ENST00000560260 TRAV8-6A0A0B4J262 113 aa14.8□□□□□ -0.04
SNX1-210ENST00000560260 SDHAF1A6NFY7 115 aa14.8□□□□□ -0.04
SNX1-210ENST00000560260 DNAH10OSP0CZ25 163 aa14.8□□□□□ -0.04
SNX1-210ENST00000560260 TGIF2-C20orf24A0A0A6YYL0 155 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 CKS2P33552 79 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 ELOBQ15370 118 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 YPEL4Q96NS1 127 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 TMEM70Q9BUB7 260 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 ST20Q9HBF5 79 aa14.79□□□□□ -0.04
SNX1-210ENST00000560260 NPYP01303 97 aa14.78□□□□□ -0.04
SNX1-210ENST00000560260 POLR2KP53803 58 aaKnown RBP14.77□□□□□ -0.04
SNX1-210ENST00000560260 LINC01556Q5JQF7 62 aa14.77□□□□□ -0.04
SNX1-210ENST00000560260 CBLN2Q8IUK8 224 aa14.77□□□□□ -0.04
SNX1-210ENST00000560260 IQCJQ1A5X6 159 aa14.76□□□□□ -0.05
SNX1-210ENST00000560260 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.76□□□□□ -0.05
SNX1-210ENST00000560260 FAT2Q9NYQ8 4349 aa14.76□□□□□ -0.05
SNX1-210ENST00000560260 TRBV24-1A0A075B6N3 115 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 TNFRSF6BO95407 300 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 IGHV3-30P01768 117 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 IGHV3-33P01772 117 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 IGHV3-30-3P0DP02 117 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 IGHV3-30-5P0DP03 117 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 COTL1Q14019 142 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 TMEM97Q5BJF2 176 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 NIT1Q86X76 327 aa14.75□□□□□ -0.05
SNX1-210ENST00000560260 SUMO2P61956 95 aaKnown RBP14.74□□□□□ -0.05
SNX1-210ENST00000560260 TTC32Q5I0X7 151 aa14.74□□□□□ -0.05
SNX1-210ENST00000560260 ORMDL3Q8N138 153 aa14.74□□□□□ -0.05
SNX1-210ENST00000560260 TRBV25-1A0A075B6N4 114 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 IGHV1-24A0A0C4DH33 117 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 TRBV27A0A0K0K1C4 114 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 TSHBP01222 138 aa14.73□□□□□ -0.05
SNX1-210ENST00000560260 PPBPP02775 128 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms