RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 VAMP8Q9BV40 100 aa9.12□□□□□ -0.95
USP3-213ENST00000559711 TRGV1A0A0A0MS02 117 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 IGHV3-73A0A0B4J1V6 119 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 IGHV3-53P01767 116 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 Q6ZSN1 163 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 PRO1933Q9H354 126 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 STAB1Q9NY15 2570 aa9.11□□□□□ -0.95
USP3-213ENST00000559711 ATP5LO75964 103 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 LGALS9CQ6DKI2 356 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 Q6ZTI0 123 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 NEGR1Q7Z3B1 354 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 TOMM6Q96B49 74 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 KIR2DL4Q99706 377 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 NOP10Q9NPE3 64 aaKnown RBP9.1□□□□□ -0.95
USP3-213ENST00000559711 G0S2P27469 103 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 ATOH7Q8N100 152 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 OR4C5Q8NGB2 326 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 C18orf15Q96N68 181 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 PAM16Q9Y3D7 125 aa9.1□□□□□ -0.95
USP3-213ENST00000559711 TRAV9-2A0A087WT02 112 aa9.09□□□□□ -0.95
USP3-213ENST00000559711 TRAV4A0A0B4J268 109 aa9.09□□□□□ -0.95
USP3-213ENST00000559711 SMIM9A6NGZ8 99 aa9.09□□□□□ -0.95
USP3-213ENST00000559711 H0Y8G0 127 aa9.09□□□□□ -0.95
USP3-213ENST00000559711 APOC4P55056 127 aa9.09□□□□□ -0.95
USP3-213ENST00000559711 LINC01549A6NIU2 74 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 P0DMU3 169 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 FAM231AP0DMU4 169 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 FAM231CP0DMU5 169 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 OXLD1Q5BKU9 147 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 C2orf66Q6UXQ4 117 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 DNAJC30Q96LL9 226 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 X6R8D5 127 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 COL6A5A8TX70 2615 aa9.08□□□□□ -0.96
USP3-213ENST00000559711 LINC00587B1AMM8 73 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 I3L3M4 83 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 CIDEAO60543 219 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 RIPPLY3P57055 190 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 EGFEM1PQ0D2K5 195 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 SPATA45Q537H7 98 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 NEXN-AS1Q8NBZ9 246 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 ZNF479Q96JC4 524 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 TSHBP01222 138 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 IGHV4-30-4P0DP06 118 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 DDTP30046 118 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 RHOHQ15669 191 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 MAJINQ3KP22 176 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 SCGB3A1Q96QR1 104 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 Q9UF83 564 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 TNFRSF18Q9Y5U5 241 aa9.07□□□□□ -0.96
USP3-213ENST00000559711 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.06□□□□□ -0.96
USP3-213ENST00000559711 PRSS1P07477 247 aa9.06□□□□□ -0.96
USP3-213ENST00000559711 KRTAP10-11P60412 298 aa9.06□□□□□ -0.96
USP3-213ENST00000559711 ERASQ7Z444 233 aa9.06□□□□□ -0.96
USP3-213ENST00000559711 PMCHL2Q9BQD1 86 aa9.06□□□□□ -0.96
USP3-213ENST00000559711 CYSLTR1Q9Y271 337 aa9.06□□□□□ -0.96
USP3-213ENST00000559711 GAGE12BA1L429 117 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 GAGE7O76087 117 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 GAGE12FP0CL80 117 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 GAGE12GP0CL81 117 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 GAGE12IP0CL82 117 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 ODF1Q14990 250 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 LINC00612Q8N6U2 182 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 ZMAT4Q9H898 229 aa9.05□□□□□ -0.96
USP3-213ENST00000559711 ZMAT5Q9UDW3 170 aaKnown RBP9.05□□□□□ -0.96
USP3-213ENST00000559711 TRGV2A0A075B6R0 118 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 TRBV10-1A0A0K0K1A3 114 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 TRAV12-1A0A0B4J245 112 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 IGIPA6NJ69 53 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 A8MZ25 164 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 DEFB104AQ8WTQ1 72 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 MIEN1Q9BRT3 115 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 DKK2Q9UBU2 259 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 TP53TG1Q9Y2A0 90 aa9.04□□□□□ -0.96
USP3-213ENST00000559711 PKD1L1Q8TDX9 2849 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 hDV102S1A0JD36 115 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 HSBP1L1C9JCN9 74 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 K7EQD1 137 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 IGLC3P0DOY3 106 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 DEFB135Q30KP9 77 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 Q6ZN92 141 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 C20orf203Q8NBC4 194 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 TIMM17AQ99595 171 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 NACAE9PAV3 2078 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 NBEAL2Q6ZNJ1 2754 aa9.03□□□□□ -0.96
USP3-213ENST00000559711 A0A087WX48 190 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 EMP1P54849 157 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 RPL39P62891 51 aaKnown RBP9.02□□□□□ -0.97
USP3-213ENST00000559711 SLC25A29Q8N8R3 303 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 OR11H2Q8NH07 326 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 RNF183Q96D59 192 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 TMEM141Q96I45 108 aa9.02□□□□□ -0.97
USP3-213ENST00000559711 TRBV7-3A0A075B6L6 115 aa9.01□□□□□ -0.97
USP3-213ENST00000559711 TRBV6-4A0A1B0GX49 114 aa9.01□□□□□ -0.97
USP3-213ENST00000559711 BAALCQ8WXS3 180 aa9.01□□□□□ -0.97
USP3-213ENST00000559711 LYRM9A8MSI8 78 aa9□□□□□ -0.97
USP3-213ENST00000559711 RPL36AP83881 106 aaKnown RBP9□□□□□ -0.97
USP3-213ENST00000559711 FHL2Q14192 279 aa9□□□□□ -0.97
USP3-213ENST00000559711 ZNRF2Q8NHG8 242 aa9□□□□□ -0.97
USP3-213ENST00000559711 RPL36ALQ969Q0 106 aaKnown RBP9□□□□□ -0.97
USP3-213ENST00000559711 UQCR10Q9UDW1 63 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms