RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 RAPGEF6Q8TEU7 1601 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 AQP10Q96PS8 301 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 SPANXDQ9BXN6 97 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.51□□□□□ -2.33
VPS13C-207ENST00000558919 WDR7Q9Y4E6 1490 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 NCOA3Q9Y6Q9 1424 aa0.51□□□□□ -2.33
VPS13C-207ENST00000558919 TANC2Q9HCD6 1990 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 USP24Q9UPU5 2620 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 A0A087WTM6 91 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 PPP3R1P63098 170 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 C10orf128Q5T292 105 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 C9orf153Q5TBE3 101 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 SCP2D1Q9UJQ7 156 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 KIAA1549LQ6ZVL6 1849 aa0.5□□□□□ -2.33
VPS13C-207ENST00000558919 MDN1Q9NU22 5596 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 HMGXB3Q12766 1538 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 ASH1LQ9NR48 2969 aaKnown RBP0.49□□□□□ -2.33
VPS13C-207ENST00000558919 CASKIN1Q8WXD9 1431 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 A0A0D9SG42 100 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 CLPSL1A2RUU4 121 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 ACYP2P14621 99 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 C5orf38Q86SI9 138 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 SVBPQ8N300 66 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 BPESC1Q9GZL8 116 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 IER3IP1Q9Y5U9 82 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 SPTBP11277 2137 aa0.49□□□□□ -2.33
VPS13C-207ENST00000558919 BAZ1AQ9NRL2 1556 aaPredicted RBP0.49□□□□□ -2.33
VPS13C-207ENST00000558919 BCL9LQ86UU0 1499 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 TRGV1A0A0A0MS02 117 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 FAM24AA6NFZ4 105 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 OOSP1A8MZH6 123 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 SSSCA1O60232 199 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 S100PP25815 95 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 GTF2H5Q6ZYL4 71 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 TTC9CQ8N5M4 171 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 SMIM11BQ8TCY0 68 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 Q96NJ1 140 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 CGREF1Q99674 301 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 WFDC6Q9BQY6 131 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 TCEAL7Q9BRU2 100 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 PRR15LQ9BU68 103 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 CYP4F30PQ9H0H9 118 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 R4GMQ9 66 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 SETBP1Q9Y6X0 1596 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 A2ML1A8K2U0 1454 aa0.48□□□□□ -2.33
VPS13C-207ENST00000558919 MAST4O15021 2626 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 NHSL1Q5SYE7 1610 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 GVQW2A0A096LPI5 108 aaPredicted RBP0.47□□□□□ -2.33
VPS13C-207ENST00000558919 C20orf202A1L168 122 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 TMEM14DPA8MWL7 114 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 PPP1R17O96001 155 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 IFITM1P13164 125 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 COMMD6Q7Z4G1 85 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 VMO1Q7Z5L0 202 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 BAGE3Q86Y29 109 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 MYOZ3Q8TDC0 251 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 LENEPQ9Y5L5 61 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 ABCA2Q9BZC7 2435 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 CASZ1Q86V15 1759 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 CPSF1Q10570 1443 aaKnown RBP0.47□□□□□ -2.33
VPS13C-207ENST00000558919 PPIP5K1Q6PFW1 1433 aa0.47□□□□□ -2.33
VPS13C-207ENST00000558919 RREB1Q92766 1687 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 SETXQ7Z333 2677 aaKnown RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 DSTQ03001 7570 aaKnown RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 NINQ8N4C6 2090 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 PDE4DIPQ5VU43 2346 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 TRAV1-2A0A0B4J238 106 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 UBE2L5PA0A1B0GUS4 154 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 ATP5EP56381 51 aaPredicted RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 SPINK7P58062 85 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 UBE2L3P68036 154 aaKnown RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 SPATA8Q6RVD6 105 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 Q6ZRX8 168 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 FAM103A1Q9BTL3 118 aaKnown RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 C10orf95Q9H7T3 257 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 CDK13Q14004 1512 aaKnown RBP0.46□□□□□ -2.34
VPS13C-207ENST00000558919 MYOM2P54296 1465 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 IQSEC2Q5JU85 1478 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 TOP2BQ02880 1626 aa0.46□□□□□ -2.34
VPS13C-207ENST00000558919 FAM135AQ9P2D6 1515 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 MUC4Q99102 2169 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 HELZP42694 1942 aaKnown RBP0.45□□□□□ -2.34
VPS13C-207ENST00000558919 GCHFRP30047 84 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 CCL18P55774 89 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 DCDP81605 110 aaKnown RBP0.45□□□□□ -2.34
VPS13C-207ENST00000558919 SPAG11BQ08648 103 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 SPAG11AQ6PDA7 123 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 C12orf57Q99622 126 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 MGST2Q99735 147 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 DPH3P1Q9H4G8 78 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 DYNLRB1Q9NP97 96 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 V9GYH0 126 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 ANK1P16157 1881 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 ANKRD17O75179 2603 aaKnown RBP0.45□□□□□ -2.34
VPS13C-207ENST00000558919 CHD8Q9HCK8 2581 aa0.45□□□□□ -2.34
VPS13C-207ENST00000558919 EIF4G3O43432 1585 aaKnown RBP0.45□□□□□ -2.34
VPS13C-207ENST00000558919 NEBP20929 6669 aa0.44□□□□□ -2.34
VPS13C-207ENST00000558919 TEP1Q99973 2627 aaKnown RBP0.44□□□□□ -2.34
VPS13C-207ENST00000558919 COL6A3P12111 3177 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms