RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 A0A0J9YXV3 536 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 LINC00315P59091 139 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 LMO4P61968 165 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 PSMG4Q5JS54 123 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 RNF183Q96D59 192 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 BBC3Q96PG8 261 aaPredicted RBP9.21□□□□□ -0.93
LDLR-205ENST00000557933 SPXQ9BT56 116 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 U3KQE9 123 aa9.21□□□□□ -0.93
LDLR-205ENST00000557933 TRAV8-3A0A0A6YYJ7 113 aa9.21□□□□□ -0.94
LDLR-205ENST00000557933 A0A0U1RRA0 63 aa9.21□□□□□ -0.94
LDLR-205ENST00000557933 TMEM238LA0A1B0GVL6 79 aa9.21□□□□□ -0.94
LDLR-205ENST00000557933 A6NJY4 79 aa9.21□□□□□ -0.94
LDLR-205ENST00000557933 DAND5Q8N907 189 aa9.21□□□□□ -0.94
LDLR-205ENST00000557933 NBEAL2Q6ZNJ1 2754 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 MTORP42345 2549 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 TRBV20-1A0A075B6N2 111 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 C19orf84I3L1E1 186 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 J3QQQ9 107 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 IGIPA6NJ69 53 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 IGHV3-30P01768 117 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 IGHV3-30-5P0DP03 117 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 LGALS3P17931 250 aaKnown RBP9.2□□□□□ -0.94
LDLR-205ENST00000557933 PMVKQ15126 192 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 USP24Q9UPU5 2620 aa9.2□□□□□ -0.94
LDLR-205ENST00000557933 MAPK1IP1LQ8NDC0 245 aa9.19□□□□□ -0.94
LDLR-205ENST00000557933 SOCS3O14543 225 aa9.19□□□□□ -0.94
LDLR-205ENST00000557933 PRSS47A8MTI9 375 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 MUSTN1Q8IVN3 82 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 A8MWV9 139 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 OOSP1A8MZH6 123 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 HERVK_113P61574 105 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 SS18L2Q9UHA2 77 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 MOB4Q9Y3A3 225 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 KIF25-AS1Q9Y6Z4 181 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 UBE2D3P61077 147 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 UBE2D2P62837 147 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 Q8N1Y9 231 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 NRGNQ92686 78 aa9.18□□□□□ -0.94
LDLR-205ENST00000557933 IGHV4-61A0A0C4DH41 118 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 TEX49A0A1B0GTD5 131 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 CRLF1O75462 422 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 TEN1Q86WV5 123 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 C10orf126Q8N4M7 172 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 NTN5Q8WTR8 489 aaPredicted RBP9.17□□□□□ -0.94
LDLR-205ENST00000557933 DUX3Q96PT4 197 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 PRO1854Q9UHT4 67 aa9.17□□□□□ -0.94
LDLR-205ENST00000557933 IGHV3-38A0A0C4DH36 116 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 OVOL1O14753 267 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 SLC25A20O43772 301 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 POLR2KP53803 58 aaKnown RBP9.16□□□□□ -0.94
LDLR-205ENST00000557933 C3orf56Q8N813 242 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 TMEM190Q8WZ59 177 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 NBPF19A0A087WUL8 3843 aa9.16□□□□□ -0.94
LDLR-205ENST00000557933 ZNF876PQ49A33 203 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 PPDPFLQ8WWR9 84 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 MRPL53Q96EL3 112 aaKnown RBP9.15□□□□□ -0.94
LDLR-205ENST00000557933 AMELXQ99217 191 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 ZNF469Q96JG9 3925 aaPredicted RBP9.15□□□□□ -0.94
LDLR-205ENST00000557933 IGSF10Q6WRI0 2623 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 VCYO14598 125 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 SLC25A29Q8N8R3 303 aa9.15□□□□□ -0.94
LDLR-205ENST00000557933 ZNF625Q96I27 306 aaPredicted RBP9.15□□□□□ -0.94
LDLR-205ENST00000557933 TRAV4A0A0B4J268 109 aa9.14□□□□□ -0.95
LDLR-205ENST00000557933 NDUFA4O00483 81 aa9.14□□□□□ -0.95
LDLR-205ENST00000557933 ANAPC13Q9BS18 74 aa9.14□□□□□ -0.95
LDLR-205ENST00000557933 DAZ1Q9NQZ3 744 aaKnown RBP9.14□□□□□ -0.95
LDLR-205ENST00000557933 KMT2BQ9UMN6 2715 aaPredicted RBP9.13□□□□□ -0.95
LDLR-205ENST00000557933 ACANP16112 2415 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 IGHV3-16A0A0C4DH30 117 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 B5MCH6 92 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 SCGB1A1P11684 91 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 CLEC2BQ92478 149 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 AVPP01185 164 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 DOPEY1Q5JWR5 2465 aa9.13□□□□□ -0.95
LDLR-205ENST00000557933 IGHV1-69DA0A0B4J2H0 117 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 IGHV1-69P01742 117 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 ZNF22P17026 224 aaPredicted RBP9.12□□□□□ -0.95
LDLR-205ENST00000557933 SYNJ2BPP57105 145 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 DEFB136Q30KP8 78 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 ADAMTSL4-AS1Q5T5F5 129 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 ERG28Q9UKR5 140 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 FAM223BA6NKX1 122 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 FAM223AQ8IWN6 122 aa9.12□□□□□ -0.95
LDLR-205ENST00000557933 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.11□□□□□ -0.95
LDLR-205ENST00000557933 IGKV2-29A2NJV5 120 aaPredicted RBP9.11□□□□□ -0.95
LDLR-205ENST00000557933 M0QY20 66 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 IGHV3-33P01772 117 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 VCX2Q9H322 139 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 ZNF462Q96JM2 2506 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 DCANP1Q8TF63 244 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 CD28P10747 220 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 TTC32Q5I0X7 151 aa9.11□□□□□ -0.95
LDLR-205ENST00000557933 SETXQ7Z333 2677 aaKnown RBP9.1□□□□□ -0.95
LDLR-205ENST00000557933 KLLNB2CW77 178 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 TRIAP1O43715 76 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 PRB1P04280 392 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 TCTEX1D4Q5JR98 221 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 FAM19A4Q96LR4 140 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 LENEPQ9Y5L5 61 aa9.1□□□□□ -0.95
LDLR-205ENST00000557933 GCN1Q92616 2671 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms