RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 NAT8BQ9UHF3 227 aa9.81□□□□□ -0.84
USP3-205ENST00000557884 TRBV7-3A0A075B6L6 115 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 IGHV3-38A0A0C4DH36 116 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 M0QY20 66 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 UBE2D3P61077 147 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 UBE2D2P62837 147 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 KRTAP1-5Q9BYS1 174 aa9.8□□□□□ -0.84
USP3-205ENST00000557884 TRAV26-2A0A0B4J265 109 aa9.79□□□□□ -0.84
USP3-205ENST00000557884 H7C1H1 209 aa9.79□□□□□ -0.84
USP3-205ENST00000557884 RIGQ13278 110 aa9.79□□□□□ -0.84
USP3-205ENST00000557884 LELP1Q5T871 98 aa9.79□□□□□ -0.84
USP3-205ENST00000557884 TRAV8-6A0A0B4J262 113 aa9.78□□□□□ -0.84
USP3-205ENST00000557884 PPP1R2P9O14990 202 aa9.78□□□□□ -0.84
USP3-205ENST00000557884 MT-ND4LP03901 98 aa9.78□□□□□ -0.84
USP3-205ENST00000557884 RASL11AQ6T310 242 aa9.78□□□□□ -0.84
USP3-205ENST00000557884 TTC32Q5I0X7 151 aa9.77□□□□□ -0.85
USP3-205ENST00000557884 MRPL54Q6P161 138 aaKnown RBP9.77□□□□□ -0.85
USP3-205ENST00000557884 GATD1Q8NB37 220 aa9.77□□□□□ -0.85
USP3-205ENST00000557884 SEC11CQ9BY50 192 aa9.77□□□□□ -0.85
USP3-205ENST00000557884 TNFRSF18Q9Y5U5 241 aa9.77□□□□□ -0.85
USP3-205ENST00000557884 HECTD4Q9Y4D8 3996 aa9.76□□□□□ -0.85
USP3-205ENST00000557884 CAMPP49913 170 aa9.76□□□□□ -0.85
USP3-205ENST00000557884 C1orf134Q5TEV5 83 aa9.76□□□□□ -0.85
USP3-205ENST00000557884 TMEM191AQ9H0A3 160 aa9.76□□□□□ -0.85
USP3-205ENST00000557884 A0A087WWC5 75 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 DNAH10OSP0CZ25 163 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 AMN1Q8IY45 258 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 Q8N3U1 123 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 ANAPC16Q96DE5 110 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
USP3-205ENST00000557884 DNAJC30Q96LL9 226 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 NIT2Q9NQR4 276 aa9.75□□□□□ -0.85
USP3-205ENST00000557884 RTL8CO15255 209 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 IGHV3-30P01768 117 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 IGHV3-33P01772 117 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 IGHV3-30-3P0DP02 117 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 IGHV3-30-5P0DP03 117 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 C6orf223Q8N319 242 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.74□□□□□ -0.85
USP3-205ENST00000557884 DEFB104AQ8WTQ1 72 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 RNF185Q96GF1 192 aa9.74□□□□□ -0.85
USP3-205ENST00000557884 DNAH11Q96DT5 4516 aa9.73□□□□□ -0.85
USP3-205ENST00000557884 SMKR1H3BMG3 65 aa9.73□□□□□ -0.85
USP3-205ENST00000557884 GAS8-AS1O95177 125 aa9.73□□□□□ -0.85
USP3-205ENST00000557884 RAB4AP20338 218 aa9.73□□□□□ -0.85
USP3-205ENST00000557884 DAZ4Q86SG3 579 aaKnown RBP9.73□□□□□ -0.85
USP3-205ENST00000557884 DAZ3Q9NR90 486 aaKnown RBP9.73□□□□□ -0.85
USP3-205ENST00000557884 TRAV9-2A0A087WT02 112 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 TRBV6-8A0A0A6YYG3 113 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 A0A1B0GW15 77 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 A0A1B0GXF2 115 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 NCR2O95944 276 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 HBBP68871 147 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 LINC01556Q5JQF7 62 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 C10orf91Q5T1B1 145 aa9.72□□□□□ -0.85
USP3-205ENST00000557884 EPPK1P58107 5090 aaKnown RBP9.71□□□□□ -0.86
USP3-205ENST00000557884 FAM104BQ5XKR9 115 aa9.71□□□□□ -0.86
USP3-205ENST00000557884 NTM-AS1Q6ZSK4 140 aa9.71□□□□□ -0.86
USP3-205ENST00000557884 CARHSP1Q9Y2V2 147 aaKnown RBP9.71□□□□□ -0.86
USP3-205ENST00000557884 PKD1P98161 4303 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 S100A8P05109 93 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 RPS10P46783 165 aaKnown RBP9.7□□□□□ -0.86
USP3-205ENST00000557884 MRPL51Q4U2R6 128 aaKnown RBP9.7□□□□□ -0.86
USP3-205ENST00000557884 NIT1Q86X76 327 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 FRZBQ92765 325 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 MRAP2Q96G30 205 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 CHCHD5Q9BSY4 110 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 CTDSP1Q9GZU7 261 aa9.7□□□□□ -0.86
USP3-205ENST00000557884 TMEM262E9PQX1 116 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 TMEM97Q5BJF2 176 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 KCNIP4Q6PIL6 250 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 ATP5L2Q7Z4Y8 100 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 C10orf126Q8N4M7 172 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 URGCP-MRPS24S4R325 110 aa9.69□□□□□ -0.86
USP3-205ENST00000557884 TRBV25-1A0A075B6N4 114 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 A0A087WX48 190 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 IGHV1-24A0A0C4DH33 117 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 C7orf77A4D0Y5 90 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 SDHAF1A6NFY7 115 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 PRSS29PA6NIE9 313 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 APOC3P02656 99 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 GAGE6Q13070 117 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 COTL1Q14019 142 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 CLRN3Q8NCR9 226 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 ST20Q9HBF5 79 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 RPS10P5Q9NQ39 176 aa9.68□□□□□ -0.86
USP3-205ENST00000557884 K7EP13 123 aa9.67□□□□□ -0.86
USP3-205ENST00000557884 SLC7A5P1Q8MH63 180 aa9.67□□□□□ -0.86
USP3-205ENST00000557884 BTF3L4Q96K17 158 aa9.67□□□□□ -0.86
USP3-205ENST00000557884 IMMP2LQ96T52 175 aa9.67□□□□□ -0.86
USP3-205ENST00000557884 Q9HAA7 133 aa9.67□□□□□ -0.86
USP3-205ENST00000557884 TRBV6-5A0A0K0K1A5 114 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 IBA57-AS1B1ANH7 110 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 CKS2P33552 79 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 AMTP48728 403 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 TNP2Q05952 138 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 RHEBQ15382 184 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 IQCJQ1A5X6 159 aa9.66□□□□□ -0.86
USP3-205ENST00000557884 NRACQ8N912 160 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms