RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DOCK10Q96BY6 2186 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 TRBV7-6A0A0J9YX20 115 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 CCL21O00585 134 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 SS18Q15532 418 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 IGFL4Q6B9Z1 124 aa10.25□□□□□ -0.77
SHMT2-226ENST00000556825 ADARB2-AS1A8MUL3 147 aa10.24□□□□□ -0.77
SHMT2-226ENST00000556825 CCKP06307 115 aa10.24□□□□□ -0.77
SHMT2-226ENST00000556825 Q96MF0 132 aa10.24□□□□□ -0.77
SHMT2-226ENST00000556825 ZGRF1Q86YA3 2104 aa10.24□□□□□ -0.77
SHMT2-226ENST00000556825 LHBP01229 141 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 IGHV3-30-3P0DP02 117 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 TEX22C9J3V5 150 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 IGHV1-69P01742 117 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 MUC6Q6W4X9 2439 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 ZFAND3Q9H8U3 227 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 RNF7Q9UBF6 113 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 ZNF580Q9UK33 172 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 ARFGEF3Q5TH69 2177 aa10.23□□□□□ -0.77
SHMT2-226ENST00000556825 TIMM17BO60830 172 aa10.22□□□□□ -0.77
SHMT2-226ENST00000556825 RPL28P46779 137 aaKnown RBP10.22□□□□□ -0.77
SHMT2-226ENST00000556825 NXPH4O95158 308 aa10.22□□□□□ -0.77
SHMT2-226ENST00000556825 MGPP08493 103 aa10.22□□□□□ -0.77
SHMT2-226ENST00000556825 Q8N2B8 174 aa10.22□□□□□ -0.77
SHMT2-226ENST00000556825 PRAC2D3DTV9 90 aa10.21□□□□□ -0.77
SHMT2-226ENST00000556825 K7EIM0 57 aa10.21□□□□□ -0.77
SHMT2-226ENST00000556825 TRBV12-3P01733 135 aa10.21□□□□□ -0.77
SHMT2-226ENST00000556825 SMAD5-AS1Q9Y6J3 95 aa10.21□□□□□ -0.77
SHMT2-226ENST00000556825 PINLYPA6NC86 204 aa10.21□□□□□ -0.78
SHMT2-226ENST00000556825 HILS1P60008 231 aa10.21□□□□□ -0.78
SHMT2-226ENST00000556825 KLKP1Q107X0 134 aa10.21□□□□□ -0.78
SHMT2-226ENST00000556825 PRR15Q8IV56 129 aa10.21□□□□□ -0.78
SHMT2-226ENST00000556825 VCYO14598 125 aa10.2□□□□□ -0.78
SHMT2-226ENST00000556825 POLR2KP53803 58 aaKnown RBP10.2□□□□□ -0.78
SHMT2-226ENST00000556825 RBM3P98179 157 aaKnown RBP10.2□□□□□ -0.78
SHMT2-226ENST00000556825 CFHR3Q02985 330 aa10.2□□□□□ -0.78
SHMT2-226ENST00000556825 Q6ZRU5 148 aa10.2□□□□□ -0.78
SHMT2-226ENST00000556825 AHCTF1Q8WYP5 2266 aa10.2□□□□□ -0.78
SHMT2-226ENST00000556825 TRAV23DV6A0A075B6W5 121 aa10.19□□□□□ -0.78
SHMT2-226ENST00000556825 A0A1W2PNU3 283 aaPredicted RBP10.19□□□□□ -0.78
SHMT2-226ENST00000556825 NDUFA12Q9UI09 145 aa10.19□□□□□ -0.78
SHMT2-226ENST00000556825 NACAE9PAV3 2078 aa10.19□□□□□ -0.78
SHMT2-226ENST00000556825 BCE1O60756 84 aa10.19□□□□□ -0.78
SHMT2-226ENST00000556825 A0A0J9YXV3 536 aa10.18□□□□□ -0.78
SHMT2-226ENST00000556825 TRBV27A0A0K0K1C4 114 aa10.18□□□□□ -0.78
SHMT2-226ENST00000556825 IGHV4OR15-8A0A075B7B6 117 aa10.18□□□□□ -0.78
SHMT2-226ENST00000556825 A0A087WW49 117 aa10.18□□□□□ -0.78
SHMT2-226ENST00000556825 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.18□□□□□ -0.78
SHMT2-226ENST00000556825 RAI1Q7Z5J4 1906 aaPredicted RBP10.18□□□□□ -0.78
SHMT2-226ENST00000556825 PRRC2AP48634 2157 aaKnown RBP10.17□□□□□ -0.78
SHMT2-226ENST00000556825 TRAV7A0A075B6U4 112 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 ATP5EP56381 51 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-226ENST00000556825 SPINK14Q6IE38 97 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 OBSCN-AS1Q96MR7 158 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 GAFA1Q96PS6 74 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 C14orf132Q9NPU4 83 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 SNRPD3P62318 126 aaKnown RBP10.17□□□□□ -0.78
SHMT2-226ENST00000556825 MSMPQ1L6U9 139 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 ATP5EP2Q5VTU8 51 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 OPRPNQ99935 248 aaPredicted RBP10.17□□□□□ -0.78
SHMT2-226ENST00000556825 LAMTOR3Q9UHA4 124 aa10.17□□□□□ -0.78
SHMT2-226ENST00000556825 PLXNB1O43157 2135 aa10.16□□□□□ -0.78
SHMT2-226ENST00000556825 FAM218AQ96MZ4 157 aa10.16□□□□□ -0.78
SHMT2-226ENST00000556825 MED13Q9UHV7 2174 aa10.16□□□□□ -0.78
SHMT2-226ENST00000556825 IGHV1-18A0A0C4DH31 117 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 IGHV1-58A0A0C4DH39 117 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 BUB1B-PAK6H3BSN5 160 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 CACNA1HO95180 2353 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 PLAC8L1A1L4L8 177 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 S100A7L2Q5SY68 101 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 DEFB104AQ8WTQ1 72 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 HES7Q9BYE0 225 aa10.15□□□□□ -0.78
SHMT2-226ENST00000556825 CELSR3Q9NYQ7 3312 aa10.14□□□□□ -0.79
SHMT2-226ENST00000556825 F8WEM9 126 aa10.14□□□□□ -0.79
SHMT2-226ENST00000556825 CCL13Q99616 98 aa10.14□□□□□ -0.79
SHMT2-226ENST00000556825 PHLDA3Q9Y5J5 127 aa10.14□□□□□ -0.79
SHMT2-226ENST00000556825 ZNF318Q5VUA4 2279 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 SAA4P35542 130 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 Q9HAA7 133 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 IGHV3-72A0A0B4J1Y9 119 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 IGHV1-2P23083 117 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 NDPQ00604 133 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 MOB4Q9Y3A3 225 aa10.13□□□□□ -0.79
SHMT2-226ENST00000556825 TRBV10-3A0A0K0K1G6 114 aa10.12□□□□□ -0.79
SHMT2-226ENST00000556825 NDUFC1O43677 76 aa10.12□□□□□ -0.79
SHMT2-226ENST00000556825 BPESC1Q9GZL8 116 aa10.12□□□□□ -0.79
SHMT2-226ENST00000556825 PRR14LQ5THK1 2151 aa10.12□□□□□ -0.79
SHMT2-226ENST00000556825 IGKV3-15P01624 115 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 MED14OSP0DP75 135 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 S100A4P26447 101 aaKnown RBP10.11□□□□□ -0.79
SHMT2-226ENST00000556825 C9orf129Q5T035 196 aaKnown RBP10.11□□□□□ -0.79
SHMT2-226ENST00000556825 DEFB108BQ8NET1 73 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 MPLKIPQ8TAP9 179 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 FAM110DQ8TAY7 271 aaPredicted RBP10.11□□□□□ -0.79
SHMT2-226ENST00000556825 RMI2Q96E14 147 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 CACNA1AO00555 2505 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 PAX4O43316 350 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 LINC00315P59091 139 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 C9orf47Q6ZRZ4 202 aa10.11□□□□□ -0.79
SHMT2-226ENST00000556825 TRAV13-2A0A0B4J235 113 aa10.1□□□□□ -0.79
SHMT2-226ENST00000556825 SOCS3O14543 225 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms