RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 SEC11CQ9BY50 192 aa11.96□□□□□ -0.49
SHMT2-225ENST00000556798 DNAH10Q8IVF4 4471 aa11.96□□□□□ -0.5
SHMT2-225ENST00000556798 IGHV3-38A0A0C4DH36 116 aa11.95□□□□□ -0.5
SHMT2-225ENST00000556798 H7C1H1 209 aa11.95□□□□□ -0.5
SHMT2-225ENST00000556798 MT-ND4LP03901 98 aa11.95□□□□□ -0.5
SHMT2-225ENST00000556798 OR10J3Q5JRS4 329 aa11.95□□□□□ -0.5
SHMT2-225ENST00000556798 KRTAP1-5Q9BYS1 174 aa11.95□□□□□ -0.5
SHMT2-225ENST00000556798 LELP1Q5T871 98 aa11.94□□□□□ -0.5
SHMT2-225ENST00000556798 ANAPC16Q96DE5 110 aa11.94□□□□□ -0.5
SHMT2-225ENST00000556798 MRPL54Q6P161 138 aaKnown RBP11.93□□□□□ -0.5
SHMT2-225ENST00000556798 RASL11AQ6T310 242 aa11.93□□□□□ -0.5
SHMT2-225ENST00000556798 GATD1Q8NB37 220 aa11.93□□□□□ -0.5
SHMT2-225ENST00000556798 TMEM191AQ9H0A3 160 aa11.93□□□□□ -0.5
SHMT2-225ENST00000556798 TRAV8-6A0A0B4J262 113 aa11.92□□□□□ -0.5
SHMT2-225ENST00000556798 CAMPP49913 170 aa11.92□□□□□ -0.5
SHMT2-225ENST00000556798 AMN1Q8IY45 258 aa11.92□□□□□ -0.5
SHMT2-225ENST00000556798 TNFRSF18Q9Y5U5 241 aa11.92□□□□□ -0.5
SHMT2-225ENST00000556798 C10orf91Q5T1B1 145 aa11.91□□□□□ -0.5
SHMT2-225ENST00000556798 RPL39LQ96EH5 51 aaKnown RBP11.91□□□□□ -0.5
SHMT2-225ENST00000556798 RNF185Q96GF1 192 aa11.91□□□□□ -0.5
SHMT2-225ENST00000556798 DNAJC30Q96LL9 226 aa11.91□□□□□ -0.5
SHMT2-225ENST00000556798 FRAS1Q86XX4 4008 aa11.9□□□□□ -0.5
SHMT2-225ENST00000556798 TTC32Q5I0X7 151 aa11.9□□□□□ -0.5
SHMT2-225ENST00000556798 NIT2Q9NQR4 276 aa11.9□□□□□ -0.5
SHMT2-225ENST00000556798 CARHSP1Q9Y2V2 147 aaKnown RBP11.9□□□□□ -0.5
SHMT2-225ENST00000556798 A0A087WWC5 75 aa11.89□□□□□ -0.51
SHMT2-225ENST00000556798 GAS8-AS1O95177 125 aa11.89□□□□□ -0.51
SHMT2-225ENST00000556798 DNAH10OSP0CZ25 163 aa11.89□□□□□ -0.51
SHMT2-225ENST00000556798 A0A1B0GXF2 115 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 IGHV3-30P01768 117 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 IGHV3-33P01772 117 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 IGHV3-30-3P0DP02 117 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 IGHV3-30-5P0DP03 117 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 RAB4AP20338 218 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 HBBP68871 147 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 DAZ4Q86SG3 579 aaKnown RBP11.88□□□□□ -0.51
SHMT2-225ENST00000556798 Q8N3U1 123 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 DEFB104AQ8WTQ1 72 aa11.88□□□□□ -0.51
SHMT2-225ENST00000556798 DAZ3Q9NR90 486 aaKnown RBP11.88□□□□□ -0.51
SHMT2-225ENST00000556798 A0A1B0GW15 77 aa11.87□□□□□ -0.51
SHMT2-225ENST00000556798 SMKR1H3BMG3 65 aa11.87□□□□□ -0.51
SHMT2-225ENST00000556798 NCR2O95944 276 aa11.87□□□□□ -0.51
SHMT2-225ENST00000556798 C1orf134Q5TEV5 83 aa11.87□□□□□ -0.51
SHMT2-225ENST00000556798 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-225ENST00000556798 TRBV6-8A0A0A6YYG3 113 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 RTL8CO15255 209 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 LINC01556Q5JQF7 62 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 NTM-AS1Q6ZSK4 140 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 C6orf223Q8N319 242 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 CTDSP1Q9GZU7 261 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 DNAH17Q9UFH2 4485 aa11.86□□□□□ -0.51
SHMT2-225ENST00000556798 C7orf77A4D0Y5 90 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 RPS10P46783 165 aaKnown RBP11.85□□□□□ -0.51
SHMT2-225ENST00000556798 MRPL51Q4U2R6 128 aaKnown RBP11.85□□□□□ -0.51
SHMT2-225ENST00000556798 FAM104BQ5XKR9 115 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 ATP5L2Q7Z4Y8 100 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 CLRN3Q8NCR9 226 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 FRZBQ92765 325 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 MRAP2Q96G30 205 aa11.85□□□□□ -0.51
SHMT2-225ENST00000556798 APOC3P02656 99 aa11.84□□□□□ -0.51
SHMT2-225ENST00000556798 S100A8P05109 93 aa11.84□□□□□ -0.51
SHMT2-225ENST00000556798 FAT2Q9NYQ8 4349 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 TRAV9-2A0A087WT02 112 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 NIT1Q86X76 327 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 SLC7A5P1Q8MH63 180 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 IMMP2LQ96T52 175 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 RPS10P5Q9NQ39 176 aa11.83□□□□□ -0.52
SHMT2-225ENST00000556798 SDHAF1A6NFY7 115 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 RHEBQ15382 184 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 TMEM97Q5BJF2 176 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 KCNIP4Q6PIL6 250 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 BTF3L4Q96K17 158 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 CHCHD5Q9BSY4 110 aa11.82□□□□□ -0.52
SHMT2-225ENST00000556798 TRBV25-1A0A075B6N4 114 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 TRBV6-5A0A0K0K1A5 114 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 NDUFA5Q16718 116 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 C10orf126Q8N4M7 172 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 NRACQ8N912 160 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 ST20Q9HBF5 79 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 URGCP-MRPS24S4R325 110 aa11.81□□□□□ -0.52
SHMT2-225ENST00000556798 IGHV1-24A0A0C4DH33 117 aa11.8□□□□□ -0.52
SHMT2-225ENST00000556798 TMEM262E9PQX1 116 aa11.8□□□□□ -0.52
SHMT2-225ENST00000556798 COTL1Q14019 142 aa11.8□□□□□ -0.52
SHMT2-225ENST00000556798 IQCJQ1A5X6 159 aa11.8□□□□□ -0.52
SHMT2-225ENST00000556798 A0A087WX48 190 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 PRSS29PA6NIE9 313 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 K7EP13 123 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 CKS2P33552 79 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 GAGE6Q13070 117 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 SVBPQ8N300 66 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 TMEM70Q9BUB7 260 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 TMEM242Q9NWH2 141 aa11.79□□□□□ -0.52
SHMT2-225ENST00000556798 EPPK1P58107 5090 aaKnown RBP11.78□□□□□ -0.52
SHMT2-225ENST00000556798 IBA57-AS1B1ANH7 110 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 D6R8Y8 96 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 S100PP25815 95 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 AMTP48728 403 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 MPV17L2Q567V2 206 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 LINC00336Q6ZUF6 198 aa11.78□□□□□ -0.52
SHMT2-225ENST00000556798 Q9HAA7 133 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms