RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 LGALS1P09382 135 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 RPL35AP18077 110 aaKnown RBP9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 CHD6Q8TD26 2715 aa9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 GPHB5Q86YW7 130 aa9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 Q96MF0 132 aa9.11□□□□□ -0.95
CCDC88C-211ENST00000556726 J3QQQ9 107 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 NDUFS8O00217 210 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 MEIG1Q5JSS6 88 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 Q5PR19 223 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 LYRM7Q5U5X0 104 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 DAND5Q8N907 189 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 TOMM6Q96B49 74 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 LENEPQ9Y5L5 61 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 STHQ8IWL8 128 aa9.1□□□□□ -0.95
CCDC88C-211ENST00000556726 RRN3P1Q2M238 152 aa9.09□□□□□ -0.95
CCDC88C-211ENST00000556726 TRAV8-3A0A0A6YYJ7 113 aa9.09□□□□□ -0.95
CCDC88C-211ENST00000556726 SIGMAR1Q99720 223 aa9.09□□□□□ -0.95
CCDC88C-211ENST00000556726 TRGV11A0A075B6L2 103 aa9.09□□□□□ -0.96
CCDC88C-211ENST00000556726 C9JAW5 83 aa9.09□□□□□ -0.96
CCDC88C-211ENST00000556726 DLX4Q92988 240 aaPredicted RBP9.09□□□□□ -0.96
CCDC88C-211ENST00000556726 CNFNQ9BYD5 112 aa9.09□□□□□ -0.96
CCDC88C-211ENST00000556726 TRGV2A0A075B6R0 118 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 SPINK8P0C7L1 97 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 NSUN5P1Q3KNT7 163 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 PAPPA-AS1Q5QFB9 102 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 TRPT1Q86TN4 253 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 A8MZ25 164 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 FOXI2Q6ZQN5 318 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 TMEM61Q8N0U2 210 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 ITPR3Q14573 2671 aa9.08□□□□□ -0.96
CCDC88C-211ENST00000556726 A0A1B0GV72 72 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 AZU1P20160 251 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 NEXN-AS1Q8NBZ9 246 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 TIMM21Q9BVV7 248 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 C11orf68Q9H3H3 251 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 ERG28Q9UKR5 140 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 U3KQE9 123 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 A0A0J9YX75 114 aa9.07□□□□□ -0.96
CCDC88C-211ENST00000556726 IGLV2-18A0A075B6J9 118 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 I3L3M4 83 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 INSL3P51460 131 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 ZNRF2Q8NHG8 242 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 VPREB3Q9UKI3 123 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 FLNBO75369 2602 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 A4D1N5 150 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 KRTAP10-9P60411 292 aa9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 SRSF2Q01130 221 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-211ENST00000556726 GAGE12JA6NER3 117 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 GAGE4Q13068 117 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 GAGE5Q13069 117 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 PRORYQ9H606 182 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 YAE1D1Q9NRH1 226 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 HIGD1BQ9P298 99 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 PEMTQ9UBM1 199 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 NF1P21359 2839 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 E9PLD3 99 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 UBE2L6O14933 153 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 ZNF580Q9UK33 172 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 A8MWV9 139 aa9.05□□□□□ -0.96
CCDC88C-211ENST00000556726 GAGE12HA6NDE8 117 aa9.04□□□□□ -0.96
CCDC88C-211ENST00000556726 MUC4Q99102 2169 aa9.04□□□□□ -0.96
CCDC88C-211ENST00000556726 ZNF415Q09FC8 603 aa9.04□□□□□ -0.96
CCDC88C-211ENST00000556726 DCANP1Q8TF63 244 aa9.04□□□□□ -0.96
CCDC88C-211ENST00000556726 FBN2P35556 2912 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 LINC01619G3V211 115 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 G3V4G9 280 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 H3BUA1 57 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 C19orf54Q5BKX5 351 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 MUSTN1Q8IVN3 82 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 TRAV12-1A0A0B4J245 112 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 TMEM262E9PQX1 116 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 COX8CQ7Z4L0 72 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 SPAG8Q99932 426 aaPredicted RBP9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 NDUFA12Q9UI09 145 aa9.03□□□□□ -0.96
CCDC88C-211ENST00000556726 TMEM141Q96I45 108 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 TM2D2Q9BX73 214 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 PRO1854Q9UHT4 67 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 NBEAL2Q6ZNJ1 2754 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 F8W1H4 67 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 COX6CP09669 75 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 ATP6V0BQ99437 205 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 Q9UF83 564 aa9.02□□□□□ -0.97
CCDC88C-211ENST00000556726 CELSR2Q9HCU4 2923 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 K7EQG2 157 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 GAGE7O76087 117 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 GAGE12FP0CL80 117 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 GAGE12GP0CL81 117 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 GAGE12IP0CL82 117 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 DEFB130BP0DP73 79 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 DEFB130AP0DP74 79 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 PSMB8P28062 276 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 ZNF575Q86XF7 245 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 TMEM238C9JI98 176 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 PSMG3-AS1Q96PY0 264 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 DSCR9P59020 149 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 UFSP1Q6NVU6 142 aa9.01□□□□□ -0.97
CCDC88C-211ENST00000556726 A0A096LPF7 62 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 SOCS3O14543 225 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 TSPAN13O95857 204 aa9□□□□□ -0.97
CCDC88C-211ENST00000556726 TAL2Q16559 108 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms