RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 A0A0J9YY99 117 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 TRBV10-2A0A0K0K1G8 114 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 J3QKU1 62 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 C3orf56Q8N813 242 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 CHD7Q9P2D1 2997 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 TRAV13-2A0A0B4J235 113 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 DEFB136Q30KP8 78 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 SLC25A29Q8N8R3 303 aa11.37□□□□□ -0.59
ARHGEF40-207ENST00000556399 IGHV3-30-3P0DP02 117 aa11.36□□□□□ -0.59
ARHGEF40-207ENST00000556399 ARHGAP32A7KAX9 2087 aa11.36□□□□□ -0.59
ARHGEF40-207ENST00000556399 NACAE9PAV3 2078 aa11.36□□□□□ -0.59
ARHGEF40-207ENST00000556399 DEFB130BP0DP73 79 aa11.36□□□□□ -0.59
ARHGEF40-207ENST00000556399 DEFB130AP0DP74 79 aa11.36□□□□□ -0.59
ARHGEF40-207ENST00000556399 SOCS3O14543 225 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 BAALC-AS2P0C853 105 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 CLEC2BQ92478 149 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 GPHB5Q86YW7 130 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 DNAJC30Q96LL9 226 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 IGHV4-30-2A0A087WSY4 118 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 SS18Q15532 418 aa11.35□□□□□ -0.59
ARHGEF40-207ENST00000556399 PRR9Q5T870 116 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 Q8N6K4 173 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 ADAMTS20P59510 1910 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 A0A0J9YX75 114 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 LMO4P61968 165 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 LAMTOR3Q9UHA4 124 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 IGHV1-58A0A0C4DH39 117 aa11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 CEMP1Q6PRD7 247 aaPredicted RBP11.34□□□□□ -0.59
ARHGEF40-207ENST00000556399 APRG1Q8IVJ8 170 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 TRBV7-3A0A075B6L6 115 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 SLURP1P55000 103 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 DEFB121Q5J5C9 76 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 UBE2DNLQ8IWF7 75 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 RNF183Q96D59 192 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 SPANXDQ9BXN6 97 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 VPREB3Q9UKI3 123 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 A0A0B4J2C4 111 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 A0A0J9YXY3 114 aa11.33□□□□□ -0.6
ARHGEF40-207ENST00000556399 J3QLI3 93 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 Q6ZQT7 251 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 PTPRQQ9UMZ3 2332 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 ACYP1P07311 99 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 INSL3P51460 131 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 H3BT86 120 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 MUC6Q6W4X9 2439 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 IGHV4OR15-8A0A075B7B6 117 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 A0A087WW49 117 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 MRGPRG-AS1Q2M3A8 158 aa11.32□□□□□ -0.6
ARHGEF40-207ENST00000556399 LGALS9O00182 355 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 C10orf105Q8TEF2 133 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 CITED2Q99967 270 aaPredicted RBP11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 SPATA25Q9BR10 227 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 FAM208BQ5VWN6 2430 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 CFAP126Q5VTH2 177 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 IGHV4-4A0A075B6R2 117 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 ZMAT4Q9H898 229 aa11.31□□□□□ -0.6
ARHGEF40-207ENST00000556399 CSPG4Q6UVK1 2322 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 HERV-K104P63124 156 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 A6NDX4 124 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 NFE4Q86UQ8 179 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 SPANXCQ9NY87 97 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 CLPSL1A2RUU4 121 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 NXPH4O95158 308 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 ZNF22P17026 224 aaPredicted RBP11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 RS1O15537 224 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 P0DMU3 169 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 FAM231AP0DMU4 169 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 FAM231CP0DMU5 169 aa11.3□□□□□ -0.6
ARHGEF40-207ENST00000556399 TMEM223A0PJW6 202 aa11.29□□□□□ -0.6
ARHGEF40-207ENST00000556399 NOP10Q9NPE3 64 aaKnown RBP11.29□□□□□ -0.6
ARHGEF40-207ENST00000556399 RNASE3P12724 160 aaKnown RBP11.29□□□□□ -0.6
ARHGEF40-207ENST00000556399 VSIG2Q96IQ7 327 aa11.29□□□□□ -0.6
ARHGEF40-207ENST00000556399 SMIM20Q8N5G0 67 aa11.29□□□□□ -0.6
ARHGEF40-207ENST00000556399 TEX49A0A1B0GTD5 131 aa11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 MIAQ16674 131 aa11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 TLN1Q9Y490 2541 aaKnown RBP11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 IGHV3-30P01768 117 aa11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 IGHV3-30-5P0DP03 117 aa11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 COX8CQ7Z4L0 72 aa11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 F8W735 103 aaPredicted RBP11.28□□□□□ -0.6
ARHGEF40-207ENST00000556399 FAM236AA0A1B0GUQ0 79 aa11.27□□□□□ -0.6
ARHGEF40-207ENST00000556399 FAM236BA0A1B0GV22 79 aa11.27□□□□□ -0.6
ARHGEF40-207ENST00000556399 TINCRA0A1B0GVN0 87 aa11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 C11orf71Q6IPW1 123 aa11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 RNF152Q8N8N0 203 aa11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 IGLV4-3A0A075B6K6 122 aa11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 IGHV3-33P01772 117 aa11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 RAI1Q7Z5J4 1906 aaPredicted RBP11.27□□□□□ -0.61
ARHGEF40-207ENST00000556399 M0QY20 66 aa11.26□□□□□ -0.61
ARHGEF40-207ENST00000556399 Q6ZS46 218 aa11.26□□□□□ -0.61
ARHGEF40-207ENST00000556399 ACACBO00763 2458 aa11.26□□□□□ -0.61
ARHGEF40-207ENST00000556399 TRBV27A0A0K0K1C4 114 aa11.26□□□□□ -0.61
ARHGEF40-207ENST00000556399 K7EQD1 137 aa11.25□□□□□ -0.61
ARHGEF40-207ENST00000556399 SND1-IT1Q9HBX3 110 aa11.25□□□□□ -0.61
ARHGEF40-207ENST00000556399 NOTCH2Q04721 2471 aa11.25□□□□□ -0.61
ARHGEF40-207ENST00000556399 ODF3Q96PU9 254 aa11.25□□□□□ -0.61
ARHGEF40-207ENST00000556399 NDUFV3P56181 108 aaKnown RBP11.25□□□□□ -0.61
ARHGEF40-207ENST00000556399 BRCA2P51587 3418 aa11.24□□□□□ -0.61
ARHGEF40-207ENST00000556399 TRIAP1O43715 76 aa11.24□□□□□ -0.61
ARHGEF40-207ENST00000556399 POLR2KP53803 58 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms